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[183219_s_at] F-box protein /// ---

Description B0391.6A /REP_DB=WormBase Gene ID /WP=CE24770 /TR=Q9NDU8 /GB=CAB76408.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 9.8
(-2.3)
A 		2
(-3)
A 		7.6
(-2.5)
A 		69.8
(3)
A 		68
B 11.1
(-0.4)
A 		2.3
(-3)
A 		3.9
(-2.5)
A 		22.9
(3)
A 		21
C 7.9
(-0.6)
A 		1.9
(-3)
A 		12.4
(1.2)
A 		17
(3)
A 		15
avr 9.6
(-1.7) 		2.1
(-3) 		8
(-2) 		36.6
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.6
(3)
A 		3.4
(-3)
A 		3.5
(-2.9)
A 		10.3
(2)
A 		6.8
(-0.5)
A 		4.9
(-1.9)
A 		8
B 4.5
(-2.3)
A 		2.8
(-2.9)
A 		20.5
(3)
A 		6.6
(-1.6)
A 		2.5
(-3)
A 		3.7
(-2.6)
A 		18
C 3.9
(-1.6)
A 		6.8
(0.2)
A 		11.3
(3)
A 		4.1
(-1.5)
A 		2.5
(-2.4)
A 		1.6
(-3)
A 		10
avr 6.7
(-0.6) 		4.3
(-2.4) 		11.8
(3) 		7
(-0.4) 		3.9
(-2.6) 		3.4
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.6
(-1)
A 		0.4
(-3)
A 		2
(-2)
A 		10.2
(3)
A 		10
B 3.5
(1)
A 		0.6
(-3)
A 		0.9
(-2.6)
A 		4.9
(3)
A 		4
C 2.6
(0.3)
A 		0.5
(-3)
A 		4.3
(3)
A 		2.9
(0.8)
A 		4
avr 3.2
(-0.1) 		0.5
(-3) 		2.4
(-0.9) 		6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.1
(1.3)
A 		1.2
(-1.7)
A 		0.8
(-3)
A 		2.6
(3)
A 		2
(1)
A 		1.2
(-1.7)
A 		2
B 1.6
(-2)
A 		0.9
(-3)
A 		5
(3)
A 		1.7
(-1.8)
A 		1
(-2.9)
A 		1.4
(-2.3)
A 		4
C 1.5
(-0.5)
A 		2.1
(1)
A 		2.9
(3)
A 		0.8
(-2.3)
A 		0.8
(-2.3)
A 		0.5
(-3)
A 		2
avr 1.7
(-0.8) 		1.4
(-1.7) 		2.9
(3) 		1.7
(-0.8) 		1.3
(-2.1) 		1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183219_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12842
Sequence Type Exemplar sequence
Representative Public ID B0391.6A NCBI
Target Description B0391.6A /REP_DB=WormBase Gene ID /WP=CE24770 /TR=Q9NDU8 /GB=CAB76408.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026180(11), NM_075670(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026180 NCBI Caenorhabditis elegans B0391.6 (B0391.6) mRNA, complete cds. 11/11 None
NM_075670 NCBI Caenorhabditis elegans Y73B3A.15 (Y73B3A.15) mRNA, complete cds. 9/11 A 
SNAP00000015400 ENSEMBL cdna:SNAP chromosome:CEL140:V:15605499:15607638:-1 11/11 None
GENEFINDER00000015413 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15602984:15609674:-1 10/11 None
B0391.6 ENSEMBL cdna:known chromosome:CEL140:V:15605499:15607638:-1 gene:B0391.6 11/11 A 
Y73B3A.15 ENSEMBL cdna:known chromosome:CEL140:X:114700:119143:1 gene:Y73B3A.15 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022308 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022344 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:114677-116814(+) 98.12 98.12
chrV:15605498-15607638(-) 100.0 100.0
Public Domain and Genome References
Gene Title F-box protein

Ensembl B0391.6
Y73B3A.15
Entrez Gene 181951 Entrez gene
190633 Entrez gene
SwissProt Q86D19 EMBL-EBI
Q95XF1 EMBL-EBI
WormBase CE33753 Wormbase
CE27326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89725 Hypothetical protein B0391.6 [Caenorhabditis elegans] ref|NP_001021351.1| B0391.6 [Caenorhabditis elegans] 0.0
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 0.0
blast AAK39365 Hypothetical protein Y73B3A.15 [Caenorhabditis elegans] ref|NP_508071.1| Y73B3A.15 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-31
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-37
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.5E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:183219_S_AT
atcgcgtcgagtatggcacaagactcaagaaggttctgaaattgttgcctcatttgttgg
atgtgaagaagttgaaacttgatagcaacttcttgagggataaggaaaacaattacgaac
ttgcgtcagtgctttctcatttcaaacctggaacgcttgaacatatgatcttggggttcc
atcgcgagtcggatattcccgggttcgaaaaagctgtccgtttggaacaatggttacagg
ttaaaaacattaaaatgtattggaaggtcgatgggcggatccctcttgagcattttcttc
actttacgagtgtcaatctggaaatttggaacggttcaagaagaaatgttattgatattc
gaaacattctcatagaatctccacactttcgatacggcagattcaagttctctccaatca
caatcagaggtcttgagcagatgtttgacccaaacttggacaggcttccactcgactgcc
gtattaattaccgcactaggcaccgtgtttttgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCGTCGAGTATGGCACAAGACT 585 37 617 Antisense
TTGTTGCCTCATTTGTTGGATGTGA 348 707 658 Antisense
CATAGAATCTCCACACTTTCGATAC 217 211 987 Antisense
TCCACACTTTCGATACGGCAGATTC 178 587 996 Antisense
TCAAGTTCTCTCCAATCACAATCAG 118 633 1019 Antisense
ATCACAATCAGAGGTCTTGAGCAGA 634 27 1033 Antisense
GAGCAGATGTTTGACCCAAACTTGG 300 389 1051 Antisense
CCAAACTTGGACAGGCTTCCACTCG 344 271 1066 Antisense
CTTCCACTCGACTGCCGTATTAATT 108 219 1081 Antisense
GTATTAATTACCGCACTAGGCACCG 625 441 1097 Antisense
GCACTAGGCACCGTGTTTTTGTGAT 73 317 1109 Antisense
Sequence Source Affymetrix Proprietary Database