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[183217_at]

Description C24H11.5 /REP_DB=WormBase Gene ID /WP=CE18528 /TR=Q9XVD4 /GB=CAB03910.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 0      4grp_high_8_8 > 45      6grp_highest_nonorm > 83      6grp_total > 86      4grp_total > 50      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 296.3
(-3)
P 		417.1
(3)
P 		340.3
(-0.8)
P 		349
(-0.4)
P 		121
B 337.9
(1.7)
P 		307.8
(0.3)
P 		365.3
(3)
P 		237.7
(-3)
P 		128
C 272.3
(-3)
P 		466.7
(3)
P 		314.4
(-1.7)
P 		288.9
(-2.5)
P 		194
avr 302.2
(-2.4) 		397.2
(3) 		340
(-0.3) 		291.9
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 459.2
(-1)
P 		381.5
(-3)
P 		431.9
(-1.7)
P 		476.9
(-0.6)
P 		526
(0.6)
P 		619.4
(3)
P 		238
B 333.3
(-3)
P 		410
(-0.9)
P 		542.9
(2.6)
P 		465.1
(0.6)
P 		491.4
(1.3)
P 		556
(3)
P 		223
C 474.3
(-1.8)
P 		506.5
(-0.9)
P 		429.6
(-3)
P 		548.2
(0.2)
P 		589.7
(1.4)
P 		649.2
(3)
P 		220
avr 422.3
(-3) 		432.7
(-2.7) 		468.1
(-1.5) 		496.7
(-0.6) 		535.7
(0.7) 		608.2
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 107.9
(3)
P 		90.5
(1.2)
P 		89
(1)
P 		51.1
(-3)
P 		57
B 107.7
(3)
P 		76
(-0.3)
P 		84.6
(0.6)
P 		50.6
(-3)
P 		57
C 90.2
(-0.1)
P 		134.2
(3)
P 		109.6
(1.3)
P 		48.7
(-3)
P 		86
avr 101.9
(3) 		100.2
(2.8) 		94.4
(2.1) 		50.1
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 84.6
(-3)
P 		135.7
(1.1)
P 		94.1
(-2.2)
P 		121
(-0.1)
P 		158.7
(3)
P 		150.8
(2.4)
P 		74
B 116
(-3)
P 		136.5
(-1.7)
P 		131.8
(-2)
P 		123.2
(-2.5)
P 		199.6
(2.5)
P 		207.3
(3)
P 		91
C 175.8
(0.7)
P 		154.6
(-0.5)
P 		109.4
(-3)
P 		110.2
(-3)
P 		190.8
(1.5)
P 		217.3
(3)
P 		108
avr 125.5
(-2) 		142.3
(-0.7) 		111.8
(-3) 		118.1
(-2.5) 		183
(2.3) 		191.8
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6867
Sequence Type Exemplar sequence
Representative Public ID C24H11.5 NCBI
Target Description C24H11.5 /REP_DB=WormBase Gene ID /WP=CE18528 /TR=Q9XVD4 /GB=CAB03910.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067123 NCBI Caenorhabditis elegans C24H11.5 (C24H11.5) mRNA, complete cds. 11/11 None
SNAP00000008943 ENSEMBL cdna:SNAP chromosome:CEL140:III:11774939:11780851:1 11/11 None
GENEFINDER00000008954 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11780111:11780503:1 11/11 None
C24H11.5 ENSEMBL cdna:known chromosome:CEL140:III:11780111:11780503:1 gene:C24H11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11780106-11780499(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H11.5
Entrez Gene 176610 Entrez gene
SwissProt Q9XVD4 EMBL-EBI
WormBase CE18528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03913 Hypothetical protein C24H11.6 [Caenorhabditis elegans] ref|NP_499523.2| MeDiaTor family member (mdt-21) [Caenorhabditis elegans] 9.0E-71
blast CAE67660 Hypothetical protein CBG13223 [Caenorhabditis briggsae] 2.0E-67
blast CAE67659 Hypothetical protein CBG13222 [Caenorhabditis briggsae] 3.0E-50
blast CAB03910 Hypothetical protein C24H11.5 [Caenorhabditis elegans] ref|NP_499524.1| C24H11.5 [Caenorhabditis elegans] 1.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR000508 EMBL-EBI Peptidase S26, signal peptidase I 2.9E-4
Sequence
Target Sequence 
>C. ELEGANS:183217_AT
atggcccagagcacacaagaagcagaaggagagcaacagaggcgacaagctgtgctccgg
gagcgatatttgagctttttgcagaaatccgccgacaagccagccaccatcgaaatgtgc
gaacgaactacggtcaccgccacaattaaagcatttcaaccgtcttcggagcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCCAGAGCACACAAGAAGCAG 583 51 13 Antisense
AACAGAGGCGACAAGCTGTGCTCCG 584 135 47 Antisense
GACAAGCTGTGCTCCGGGAGCGATA 181 365 56 Antisense
GGGAGCGATATTTGAGCTTTTTGCA 512 495 71 Antisense
TGAGCTTTTTGCAGAAATCCGCCGA 288 569 83 Antisense
TTTTGCAGAAATCCGCCGACAAGCC 166 675 89 Antisense
AAGCCAGCCACCATCGAAATGTGCG 394 149 109 Antisense
ATGTGCGAACGAACTACGGTCACCG 329 47 127 Antisense
CTACGGTCACCGCCACAATTAAAGC 588 225 140 Antisense
GTCACCGCCACAATTAAAGCATTTC 679 465 145 Antisense
AGCATTTCAACCGTCTTCGGAGCAC 75 77 162 Antisense
Sequence Source Affymetrix Proprietary Database