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[183216_at]

Description Y51B9A.8 /REP_DB=WormBase Gene ID /WP=CE19218 /TR=Q9XXC6 /GB=CAA19536.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 68.4
(2.5)
A 		12.5
(-3)
A 		33.9
(-0.9)
A 		73.9
(3)
A 		61
B 32.9
(3)
A 		8.7
(-2.1)
A 		4.6
(-3)
A 		23.3
(1)
A 		28
C 63.5
(3)
A 		9.8
(-2.7)
A 		6.6
(-3)
A 		47.4
(1.3)
A 		57
avr 54.9
(3) 		10.3
(-3) 		15
(-2.4) 		48.2
(2.1) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 10.7
(-3)
A 		46.9
(0.4)
A 		72.6
(2.9)
P 		22.7
(-1.9)
A 		12.8
(-2.8)
A 		73.9
(3)
P 		63
B 6.6
(-2.8)
A 		4.3
(-3)
A 		83.1
(3)
P 		58.1
(1.1)
A 		5
(-2.9)
A 		36.6
(-0.5)
P 		79
C 7.5
(-2.8)
A 		4.1
(-3)
A 		105.2
(3)
P 		39.3
(-0.9)
A 		7.3
(-2.8)
A 		48.7
(-0.4)
P 		101
avr 8.3
(-3) 		18.4
(-2.2) 		87
(3) 		40
(-0.6) 		8.4
(-3) 		53.1
(0.4) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 24.9
(3)
A 		2.7
(-3)
A 		8.9
(-1.3)
A 		10.8
(-0.8)
A 		22
B 10.5
(3)
A 		2.2
(-2.3)
A 		1.1
(-3)
A 		5
(-0.5)
A 		9
C 21
(3)
A 		2.8
(-2.8)
A 		2.3
(-3)
A 		8
(-1.2)
A 		19
avr 18.8
(3) 		2.6
(-3) 		4.1
(-2.4) 		7.9
(-1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2
(-3)
A 		16.7
(2.5)
A 		15.8
(2.2)
P 		5.8
(-1.6)
A 		3.9
(-2.3)
A 		18
(3)
P 		16
B 2.3
(-2.7)
A 		1.4
(-3)
A 		20.2
(3)
P 		15.4
(1.5)
A 		2
(-2.8)
A 		13.6
(0.9)
P 		19
C 2.8
(-2.6)
A 		1.3
(-3)
A 		26.8
(3)
P 		7.9
(-1.4)
A 		2.4
(-2.7)
A 		16.3
(0.5)
P 		26
avr 2.4
(-3) 		6.5
(-1.7) 		20.9
(3) 		9.7
(-0.6) 		2.8
(-2.9) 		16
(1.4) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3964
Sequence Type Exemplar sequence
Representative Public ID Y51B9A.8 NCBI
Target Description Y51B9A.8 /REP_DB=WormBase Gene ID /WP=CE19218 /TR=Q9XXC6 /GB=CAA19536.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063602 NCBI Caenorhabditis elegans Y51B9A.8 (Y51B9A.8) mRNA, complete cds. 11/11 None
SNAP00000039073 ENSEMBL cdna:SNAP chromosome:CEL140:II:9398778:9400409:1 11/11 None
GENEFINDER00000039080 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9398778:9399727:1 11/11 None
Y51B9A.8 ENSEMBL cdna:known chromosome:CEL140:II:9398778:9399740:1 gene:Y51B9A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9398774-9399737(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51B9A.8
Entrez Gene 190141 Entrez gene
SwissProt Q9XXC6 EMBL-EBI
WormBase CE19218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19536 Hypothetical protein Y51B9A.8 [Caenorhabditis elegans] ref|NP_496003.1| Y51B9A.8 [Caenorhabditis elegans] 1.0E-97
blast CAA19536 Hypothetical protein Y51B9A.8 [Caenorhabditis elegans] ref|NP_496003.1| Y51B9A.8 [Caenorhabditis elegans] 1.0E-78
blast CAA19536 Hypothetical protein Y51B9A.8 [Caenorhabditis elegans] ref|NP_496003.1| Y51B9A.8 [Caenorhabditis elegans] 2.0E-78
blast CAA19537 Hypothetical protein Y51B9A.7 [Caenorhabditis elegans] ref|NP_496004.1| Y51B9A.7 [Caenorhabditis elegans] 3.0E-12
blast CAE73530 Hypothetical protein CBG20993 [Caenorhabditis briggsae] 2.0E-10
blast CAB02944 Hypothetical protein F15A4.6 [Caenorhabditis elegans] ref|NP_496658.1| F15A4.6 [Caenorhabditis elegans] 6.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.5E-13
Pfam IPR007026 EMBL-EBI CC domain 4.0E-13
Pfam IPR007026 EMBL-EBI CC domain 0.024
Sequence
Target Sequence 
>C. ELEGANS:183216_AT
actattttctttattctcgcagcttccacaagcgcccaacaagtggtttcttgtcgagtt
tcttttactggaccggcttttggaggagtttgtccagcaggaaatactgaagtctctagt
ggagactgttgtccaactgctcaggttgttaatggaacaatcacctgtaacggagggctt
gtaggaccatcaattggcggtttgtgcccggcaggatccagtctgactactgctcgtgat
tgctgcaacaatgcgaatattgtgatcaccactccatgtgtcgacgtgtatccaagatgc
gcacactatcaaaaatgttgtgccaatccacaattcgaggcaaaaatgagagcaaactgc
gcgcttacttgcaaattctgtaagcttttcttttaccgaaaatctcaaggaaagatcaca
cccatggagtccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATTTTCTTTATTCTCGCAGCTT 225 103 28 Antisense
ACAAGCGCCCAACAAGTGGTTTCTT 14 113 55 Antisense
TCTTTTACTGGACCGGCTTTTGGAG 622 611 88 Antisense
GTGGAGACTGTTGTCCAACTGCTCA 73 491 146 Antisense
CATCAATTGGCGGTTTGTGCCCGGC 423 213 215 Antisense
AGGATCCAGTCTGACTACTGCTCGT 9 57 240 Antisense
CTACTGCTCGTGATTGCTGCAACAA 215 227 254 Antisense
TCACCACTCCATGTGTCGACGTGTA 85 625 293 Antisense
GTATCCAAGATGCGCACACTATCAA 653 453 315 Antisense
GAGAGCAAACTGCGCGCTTACTTGC 337 395 375 Antisense
GAAAGATCACACCCATGGAGTCCGA 80 361 437 Antisense
Sequence Source Affymetrix Proprietary Database