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[183214_at]

Description C26F1.7 /REP_DB=WormBase Gene ID /WP=CE06881 /TR=Q18227 /GB=AAB37071.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 64      6grp_total > 84      4grp_total > 60      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 402
1 2 3 4 range
A 607.3
(2.3)
P 		614.7
(2.5)
P 		644.1
(3)
P 		314.3
(-3)
P 		330
B 581.8
(1.9)
P 		654.6
(3)
P 		552.5
(1.5)
P 		256.9
(-3)
P 		398
C 640.8
(2.7)
P 		558.9
(1.5)
P 		659
(3)
P 		268.6
(-3)
P 		390
avr 610
(2.8) 		609.4
(2.8) 		618.5
(3) 		279.9
(-3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 616.4
(-3)
P 		882.5
(2.9)
P 		752.5
(0)
P 		885.6
(3)
P 		846.9
(2.1)
P 		820.9
(1.6)
P 		269
B 646.6
(-3)
P 		715.1
(-1.4)
P 		730.5
(-1)
P 		815.1
(1)
P 		897.4
(3)
P 		818.4
(1.1)
P 		251
C 655.9
(-3)
P 		785.4
(-1)
P 		903.9
(0.8)
P 		905.2
(0.8)
P 		874.6
(0.3)
P 		1051.2
(3)
P 		395
avr 639.6
(-3) 		794.3
(0.6) 		795.6
(0.6) 		868.6
(2.3) 		873
(2.4) 		896.8
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 221.1
(3)
P 		133.4
(-0)
P 		168.4
(1.2)
P 		46
(-3)
P 		175
B 185.5
(3)
P 		161.7
(1.9)
P 		128
(0.4)
P 		54.7
(-3)
P 		131
C 212.1
(2.4)
P 		160.7
(0.8)
P 		229.7
(3)
P 		45.3
(-3)
P 		184
avr 206.2
(3) 		151.9
(0.9) 		175.4
(1.8) 		48.7
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 113.6
(-3)
P 		313.9
(3)
P 		163.9
(-1.5)
P 		224.6
(0.3)
P 		255.6
(1.3)
P 		199.9
(-0.4)
P 		200
B 225
(-1.5)
P 		238
(-1.1)
P 		177.4
(-3)
P 		215.9
(-1.8)
P 		364.6
(3)
P 		305.2
(1.1)
P 		187
C 243.1
(-0.8)
P 		239.6
(-1)
P 		230.1
(-1.3)
P 		182
(-3)
P 		283
(0.6)
P 		351.9
(3)
P 		170
avr 193.9
(-2.8) 		263.8
(1) 		190.5
(-3) 		207.5
(-2.1) 		301.1
(3) 		285.7
(2.2) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12001
Sequence Type Exemplar sequence
Representative Public ID C26F1.7 NCBI
Target Description C26F1.7 /REP_DB=WormBase Gene ID /WP=CE06881 /TR=Q18227 /GB=AAB37071.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072602 NCBI Caenorhabditis elegans C26F1.7 (C26F1.7) mRNA, complete cds. 11/11 None
SNAP00000018566 ENSEMBL cdna:SNAP chromosome:CEL140:V:7763203:7764004:1 11/11 None
GENEFINDER00000018586 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7763203:7764004:1 11/11 None
C26F1.7 ENSEMBL cdna:known chromosome:CEL140:V:7763202:7764205:1 gene:C26F1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7763203-7764005(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26F1.7
Entrez Gene 182943 Entrez gene
SwissProt Q18227 EMBL-EBI
WormBase CE06881 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37071 Hypothetical protein C26F1.7 [Caenorhabditis elegans] ref|NP_505003.1| C26F1.7 [Caenorhabditis elegans] 8.0E-78
blast CAE73183 Hypothetical protein CBG20581 [Caenorhabditis briggsae] 4.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR001310 EMBL-EBI Histidine triad (HIT) protein 4.5E-6
Sequence
Target Sequence 
>C. ELEGANS:183214_AT
gacgtcaatgcatacttctgttaacggatgcaagttttgtgacattgtcaaaaataaaaa
agaattgcaattgaaggagaataaaagttgcgtagtaatcaacgacataaagccgaaggc
aaaaaatcattaccttgtgctcagcaaacaacacatagcgaagccaacggatctcactgt
tgctgatgttccattattggaagaaatggaaaaaaccggacgcgaattgctccgcgagca
tttgaaaaagaaaggcgaagcagacacagttgaggatatgcttcgaatcggatttcatct
gccacctcttctctctgttcatcatcttcatatgcacattatctatcctatcagtgatat
gggtctgatctccagaaagctgacattccgccctggaaaagtgttcaaaccagctcgtga
gctaatcgatcagctgaaagaagacgctggtgtaccggatccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCAATGCATACTTCTGTTAAC 705 377 15 Antisense
AAAAATCATTACCTTGTGCTCAGCA 366 129 136 Antisense
ATAGCGAAGCCAACGGATCTCACTG 22 23 169 Antisense
GGATCTCACTGTTGCTGATGTTCCA 675 511 183 Antisense
AAACCGGACGCGAATTGCTCCGCGA 125 125 227 Antisense
TTCGAATCGGATTTCATCTGCCACC 413 695 296 Antisense
TCTCTCTGTTCATCATCTTCATATG 168 613 324 Antisense
TATGCACATTATCTATCCTATCAGT 498 657 345 Antisense
CCAGAAAGCTGACATTCCGCCCTGG 163 271 386 Antisense
AAAAGTGTTCAAACCAGCTCGTGAG 119 131 411 Antisense
AAGACGCTGGTGTACCGGATCCATT 499 153 455 Antisense
Sequence Source Affymetrix Proprietary Database