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[183213_at]

Description F21F3.4 /REP_DB=WormBase Gene ID /WP=CE09534 /TR=P91264 /GB=AAB42281.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 43.4
(-1.9)
A 		41
(-2)
A 		15.2
(-3)
A 		173.9
(3)
P 		159
B 13.5
(-2.7)
A 		6.3
(-3)
A 		29.3
(-2.2)
A 		177.5
(3)
A 		171
C 39.9
(-2.1)
A 		5.8
(-3)
A 		32.4
(-2.3)
A 		233.4
(3)
P 		228
avr 32.3
(-2.5) 		17.7
(-3) 		25.6
(-2.7) 		194.9
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 9.9
(-3)
A 		28.7
(-2.7)
A 		114.1
(-1.3)
A 		195.2
(0)
P 		245.7
(0.9)
P 		376.6
(3)
P 		367
B 12.6
(-3)
A 		10.3
(-3)
A 		106.9
(-1.4)
A 		114.5
(-1.2)
A 		262.5
(1.2)
P 		366.6
(3)
P 		356
C 5.9
(-3)
A 		66.1
(-1.9)
A 		135.3
(-0.6)
A 		135.8
(-0.6)
A 		267.2
(1.9)
P 		324.7
(3)
P 		319
avr 9.5
(-3) 		35
(-2.6) 		118.8
(-1.1) 		148.5
(-0.6) 		258.5
(1.3) 		356
(3) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 15.8
(0.3)
A 		8.9
(-1.6)
A 		4
(-3)
A 		25.4
(3)
P 		21
B 4.3
(-2.6)
A 		1.6
(-3)
A 		6.8
(-2.1)
A 		37.8
(3)
A 		36
C 13.2
(-1.2)
A 		1.7
(-3)
A 		11.3
(-1.5)
A 		39.3
(3)
P 		38
avr 11.1
(-1.6) 		4.1
(-3) 		7.4
(-2.3) 		34.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 1.8
(-3)
A 		10.2
(-2.4)
A 		24.9
(-1.5)
A 		49.5
(0.2)
P 		74.1
(1.8)
P 		91.7
(3)
P 		90
B 4.4
(-3)
A 		3.4
(-3)
A 		25.9
(-2)
A 		30.3
(-1.8)
A 		106.6
(1.6)
P 		136.7
(3)
P 		133
C 2.2
(-3)
A 		20.2
(-2)
A 		34.4
(-1.2)
A 		27.3
(-1.6)
A 		86.4
(1.7)
P 		108.7
(3)
P 		107
avr 2.8
(-3) 		11.3
(-2.5) 		28.4
(-1.6) 		35.7
(-1.2) 		89
(1.7) 		112.4
(3) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1984
Sequence Type Exemplar sequence
Representative Public ID F21F3.4 NCBI
Target Description F21F3.4 /REP_DB=WormBase Gene ID /WP=CE09534 /TR=P91264 /GB=AAB42281.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059070 NCBI Caenorhabditis elegans F21F3.4 (F21F3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000035682 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4896004:4897542:1 11/11 None
SNAP00000035671 ENSEMBL cdna:SNAP chromosome:CEL140:I:4896224:4897542:1 10/11 None
F21F3.4 ENSEMBL cdna:known chromosome:CEL140:I:4896004:4897542:1 gene:F21F3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4896003-4897542(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21F3.4
Entrez Gene 184785 Entrez gene
SwissProt P91264 EMBL-EBI
WormBase CE09534 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42281 Hypothetical protein F21F3.4 [Caenorhabditis elegans] ref|NP_491471.1| F21F3.4 [Caenorhabditis elegans] 0.0
blast AAB42281 Hypothetical protein F21F3.4 [Caenorhabditis elegans] ref|NP_491471.1| F21F3.4 [Caenorhabditis elegans] 1.0E-178
blast AAB42281 Hypothetical protein F21F3.4 [Caenorhabditis elegans] ref|NP_491471.1| F21F3.4 [Caenorhabditis elegans] 1.0E-168
blast CAE73109 Hypothetical protein CBG20490 [Caenorhabditis briggsae] 1.0E-101
blast CAE73109 Hypothetical protein CBG20490 [Caenorhabditis briggsae] 1.0E-100
blast CAE73109 Hypothetical protein CBG20490 [Caenorhabditis briggsae] 9.0E-97
Sequence
Target Sequence 
>C. ELEGANS:183213_AT
gacccagatgggtgtcatgtctgccgaagcttggtaaaggaagaatcgtgaaaattcatc
gaaagattccggaaactgctccatttgaaagttatgatcagatgaagtcttattggaaga
agacgaaatacgaatttgtttttcagtacggatatgatcttccaccatccgaaccggaag
tttactatgatgtactattccataatggtgaaacaatgttgtatccactctactgtgttc
tcacgggaacccccgaagttcttgaaaaccgtgttggaaaaacaatgacaagtgaggcat
tggctctgtttttgaaagcattcaaggaagcatcgattgtcatttgtggaagtgttctag
ctccagaagaccaagactgtcaagctgtaaaagcctacctggatgtcatgtcgatgtcag
ccataaattcttcaaaactcaaaaaagaggagaaagtgacgagaaaaagttctggaggag
gtcatgaagagcatcaaaaaccttatgaaatccgaaagatctatccgaaaattccagttg
gtgtcaagagaagcatctcttcctcaagtcaatccggcttaccgatcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCAGATGGGTGTCATGTCTGCC 9 383 581 Antisense
GTCATGTCTGCCGAAGCTTGGTAAA 340 467 594 Antisense
GATTCCGGAAACTGCTCCATTTGAA 118 433 645 Antisense
AGTACGGATATGATCTTCCACCATC 172 63 725 Antisense
TGTATCCACTCTACTGTGTTCTCAC 168 561 800 Antisense
AGTGAGGCATTGGCTCTGTTTTTGA 40 61 871 Antisense
GGAAGTGTTCTAGCTCCAGAAGACC 565 531 928 Antisense
AAAGCCTACCTGGATGTCATGTCGA 40 125 970 Antisense
GGATGTCATGTCGATGTCAGCCATA 639 513 981 Antisense
AGAGAAGCATCTCTTCCTCAAGTCA 302 69 1127 Antisense
AAGTCAATCCGGCTTACCGATCGTC 262 157 1146 Antisense
Sequence Source Affymetrix Proprietary Database