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[183212_at]

Description K03E5.5 /REP_DB=WormBase Gene ID /WP=CE18010 /TR=O61846 /GB=AAC17567.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 44      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 35
(0.7)
A 		47.1
(3)
A 		15.6
(-3)
A 		16.2
(-2.9)
A 		32
B 23.8
(3)
A 		22.6
(2.6)
A 		5.6
(-2.5)
A 		3.8
(-3)
A 		20
C 38.5
(3)
A 		31.2
(-0.4)
A 		26.3
(-2.7)
A 		25.6
(-3)
A 		13
avr 32.4
(2.6) 		33.6
(3) 		15.8
(-2.8) 		15.2
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 29.7
(0.5)
A 		11.3
(-2.1)
A 		4.6
(-3)
A 		7.3
(-2.6)
A 		5.4
(-2.9)
A 		47.5
(3)
A 		43
B 3.7
(-1.6)
A 		7.9
(2.3)
A 		4.1
(-1.2)
A 		7.2
(1.6)
A 		2.2
(-3)
A 		8.7
(3)
A 		7
C 6
(-1.9)
A 		6
(-1.9)
A 		4.9
(-2.7)
A 		9.2
(0.5)
A 		12.6
(3)
A 		4.5
(-3)
A 		8
avr 13.1
(0.3) 		8.4
(-1.5) 		4.5
(-3) 		7.9
(-1.7) 		6.7
(-2.2) 		20.2
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.8
(3)
A 		10.2
(1.5)
A 		4.1
(-2)
A 		2.4
(-3)
A 		10
B 7.6
(3)
A 		5.6
(1.2)
A 		1.3
(-2.6)
A 		0.8
(-3)
A 		7
C 12.8
(3)
A 		9
(0.3)
A 		9.2
(0.5)
A 		4.3
(-3)
A 		9
avr 11.1
(3) 		8.3
(1) 		4.9
(-1.3) 		2.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.5
(-0.5)
A 		4
(-1.3)
A 		1
(-3)
A 		1.8
(-2.5)
A 		1.6
(-2.7)
A 		11.6
(3)
A 		11
B 1.3
(-2)
A 		2.6
(1.4)
A 		1
(-2.7)
A 		1.9
(-0.4)
A 		0.9
(-3)
A 		3.2
(3)
A 		2
C 2.2
(-1.1)
A 		1.8
(-1.9)
A 		1.3
(-3)
A 		1.9
(-1.7)
A 		4.1
(3)
A 		1.5
(-2.6)
A 		3
avr 3
(-0.3) 		2.8
(-0.6) 		1.1
(-3) 		1.9
(-1.9) 		2.2
(-1.5) 		5.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.76
Sequence Type Exemplar sequence
Representative Public ID K03E5.5 NCBI
Target Description K03E5.5 /REP_DB=WormBase Gene ID /WP=CE18010 /TR=O61846 /GB=AAC17567.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026367
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000035357 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3399283:3408301:-1 None
K03E5.5a ENSEMBL cdna:known chromosome:CEL140:I:3375100:3402865:-1 gene:K03E5.5 None
NM_001026367 NCBI Caenorhabditis elegans K03E5.5a (K03E5.5) mRNA, complete cds. None
SNAP00000035349 ENSEMBL cdna:SNAP chromosome:CEL140:I:3399467:3405520:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3401298-3404349(-) 100.0 100.0
Public Domain and Genome References
Ensembl K03E5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021538 K03E5.5a [Caenorhabditis elegans] 0.0
blast NP_001021539 K03E5.5b [Caenorhabditis elegans] 0.0
blast T33824 hypothetical protein W05F2.4 - Caenorhabditis elegans 0.0
blast NP_001021538 K03E5.5a [Caenorhabditis elegans] 4.0E-95
blast CAE68970 Hypothetical protein CBG14951 [Caenorhabditis briggsae] 2.0E-79
blast NP_001021538 K03E5.5a [Caenorhabditis elegans] 2.0E-67
blast CAE68970 Hypothetical protein CBG14951 [Caenorhabditis briggsae] 2.0E-58
Sequence
Target Sequence 
>C. ELEGANS:183212_AT
acgacggcctttaattcagcgaatcaaattcgactcgcaaaacatcatctcaatagagca
tactttctcaccacctttacactatttcgcagatggtcatcagtaggcagcggcgcttca
ccgtctgcatcaatttctagatcaactccgacagcgacaaatgttctttccagtggtgta
gagccatctacagtcggaacaagctggaattcagtccgatggaataagccatcaacatcc
tatcgggccaacctggcgtctcgctttgagaacaactcaactgcaaactcgaacagcagt
tacactccacaaagaacttccagatttctgagctccgccgccaagaatgccgccgacctt
gccagcatcggaccgtcggtaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACGGCCTTTAATTCAGCGAATC 521 89 109 Antisense
TTCGACTCGCAAAACATCATCTCAA 487 695 137 Antisense
AATAGAGCATACTTTCTCACCACCT 477 173 160 Antisense
ACCACCTTTACACTATTTCGCAGAT 427 85 178 Antisense
TTCACCGTCTGCATCAATTTCTAGA 394 687 225 Antisense
TTCTAGATCAACTCCGACAGCGACA 169 691 243 Antisense
GCGACAAATGTTCTTTCCAGTGGTG 506 289 262 Antisense
AGAGCCATCTACAGTCGGAACAAGC 396 59 288 Antisense
AAGCCATCAACATCCTATCGGGCCA 315 149 334 Antisense
GAACTTCCAGATTTCTGAGCTCCGC 357 351 422 Antisense
TGCCAGCATCGGACCGTCGGTAAGT 683 585 468 Antisense
Sequence Source Affymetrix Proprietary Database