[Home] | [Total List]

[183211_s_at]

Description C04F12.7 /REP_DB=WormBase Gene ID /WP=CE19680 /TR=Q9U3R9 /GB=CAB62797.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 21      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 37.5
(3)
A 		29.7
(1.5)
A 		5.6
(-3)
A 		10.3
(-2.1)
A 		32
B 31
(-2)
A 		38.5
(-0.2)
A 		26.9
(-3)
A 		51.7
(3)
A 		25
C 42.6
(0.7)
A 		11.9
(-3)
A 		24.8
(-1.4)
A 		61.3
(3)
A 		49
avr 37
(1.9) 		26.7
(-0.9) 		19.1
(-3) 		41.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 693
1 2 3 4 5 6 range
A 38.7
(-3)
A 		40.7
(-3)
A 		50.4
(-2.9)
A 		108.9
(-2.4)
P 		468.6
(0.8)
P 		710.6
(3)
P 		672
B 17.4
(-3)
A 		35.9
(-2.8)
A 		49.6
(-2.6)
A 		47.4
(-2.6)
P 		465.8
(3)
P 		431.2
(2.5)
P 		448
C 21.2
(-3)
A 		20
(-3)
A 		25.7
(-2.9)
A 		104
(-2)
P 		454.2
(2.2)
P 		517.4
(3)
P 		497
avr 25.8
(-3) 		32.2
(-2.9) 		41.9
(-2.8) 		86.8
(-2.3) 		462.9
(2) 		553.1
(3) 		527
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.6
(3)
A 		6.4
(-0.6)
A 		1.5
(-3)
A 		1.5
(-3)
A 		12
B 9.9
(1.6)
A 		9.5
(1.1)
A 		6.2
(-3)
A 		11
(3)
A 		5
C 14.1
(3)
A 		3.4
(-3)
A 		8.6
(-0.1)
A 		10.3
(0.9)
A 		11
avr 12.5
(3) 		6.4
(-2.2) 		5.4
(-3) 		7.6
(-1.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 7.1
(-3)
A 		14.5
(-2.7)
A 		11
(-2.9)
A 		27.6
(-2.3)
P 		141.4
(1.9)
P 		173
(3)
P 		166
B 6
(-3)
A 		11.9
(-2.8)
A 		12
(-2.8)
A 		12.6
(-2.8)
P 		189.3
(3)
P 		160.8
(2.1)
P 		183
C 7.8
(-2.9)
A 		6.1
(-3)
A 		6.5
(-3)
A 		20.9
(-2.5)
P 		147
(2.1)
P 		173.2
(3)
P 		167
avr 7
(-3) 		10.8
(-2.9) 		9.8
(-2.9) 		20.4
(-2.5) 		159.2
(2.6) 		169
(3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183211_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2245
Sequence Type Exemplar sequence
Representative Public ID C04F12.7 NCBI
Target Description C04F12.7 /REP_DB=WormBase Gene ID /WP=CE19680 /TR=Q9U3R9 /GB=CAB62797.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060178 NCBI Caenorhabditis elegans C04F12.7 (C04F12.7) mRNA, complete cds. 11/11 None
GENEFINDER00000037415 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9700822:9704831:-1 11/11 None
SNAP00000037405 ENSEMBL cdna:SNAP chromosome:CEL140:I:9702743:9704831:-1 11/11 None
C04F12.7 ENSEMBL cdna:known chromosome:CEL140:I:9703832:9704883:-1 gene:C04F12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5382956-5383840(+) 97.37 97.37
chrI:9703795-9704762(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04F12.7
Entrez Gene 172819 Entrez gene
SwissProt Q9U3R9 EMBL-EBI
WormBase CE19680 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62797 Hypothetical protein C04F12.7 [Caenorhabditis elegans] ref|NP_492579.1| C04F12.7 [Caenorhabditis elegans] 1.0E-100
blast CAB62797 Hypothetical protein C04F12.7 [Caenorhabditis elegans] ref|NP_492579.1| C04F12.7 [Caenorhabditis elegans] 1.0E-99
blast CAB62797 Hypothetical protein C04F12.7 [Caenorhabditis elegans] ref|NP_492579.1| C04F12.7 [Caenorhabditis elegans] 2.0E-99
blast G88690 protein F41H10.1 [imported] - Caenorhabditis elegans 9.0E-96
blast G88690 protein F41H10.1 [imported] - Caenorhabditis elegans 1.0E-95
blast G88690 protein F41H10.1 [imported] - Caenorhabditis elegans 2.0E-95
blast CAE60039 Hypothetical protein CBG03550 [Caenorhabditis briggsae] 5.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 1.8E-84
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 7.0E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492579.1 4 7-29,49-68,73-95,123-145
C04F12.7 4 7-29,49-68,73-95,123-145
GENEFINDER00000037415 3 7-29,67-89,123-145
SNAP00000037405 4 7-29,49-68,73-95,123-145
Sequence
Target Sequence 
>C. ELEGANS:183211_S_AT
cttatcgtcaattgaagcaccactttgtgctgtcatcactgtcatcttcctagtcagtgg
tctctactcaactgcatacaaagttgccggatcaaaaacggtactcgatgagactgctct
ggatactaaagatatgttgatgaccgcattggcactcatgtcactcattggactctgctc
aactcgtcgtgcatttggtgtcttcactcttctcttcatgatgcatgcatttgtattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTATCGTCAATTGAAGCACCACTT 648 221 21 Antisense
GAAGCACCACTTTGTGCTGTCATCA 542 341 34 Antisense
AGCACCACTTTGTGCTGTCATCACT 170 77 36 Antisense
TCATCACTGTCATCTTCCTAGTCAG 162 621 53 Antisense
TGTCATCTTCCTAGTCAGTGGTCTC 365 559 60 Antisense
TCATCTTCCTAGTCAGTGGTCTCTA 43 621 62 Antisense
TCCTAGTCAGTGGTCTCTACTCAAC 433 591 68 Antisense
AGTCAGTGGTCTCTACTCAACTGCA 541 59 72 Antisense
CGATGAGACTGCTCTGGATACTAAA 22 249 126 Antisense
ACTCTTCTCTTCATGATGCATGCAT 266 101 226 Antisense
CTTCATGATGCATGCATTTGTATTC 568 221 234 Antisense
Sequence Source Affymetrix Proprietary Database