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[183210_at]

Description K03E6.7 /REP_DB=WormBase Gene ID /WP=CE07333 /TR=Q21194 /GB=AAC69046.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 48      4grp_high_8_8 > 12      6grp_total > 37      4grp_total > 05      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 491.6
(-0.6)
P 		422.9
(-1.5)
P 		315.1
(-3)
P 		755
(3)
M 		440
B 469.4
(-1.5)
P 		393.1
(-3)
P 		409.3
(-2.7)
P 		706.5
(3)
P 		313
C 607.9
(0.6)
P 		393
(-2.3)
P 		342.3
(-3)
P 		782.9
(3)
P 		441
avr 523
(-0.4) 		403
(-2.3) 		355.6
(-3) 		748.1
(3) 		393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 394.2
(3)
P 		361.8
(1.7)
P 		251.4
(-2.5)
P 		238.8
(-3)
P 		308.9
(-0.3)
P 		351.2
(1.3)
P 		155
B 413.5
(3)
P 		366.1
(1.1)
P 		333.9
(-0.2)
P 		265.5
(-3)
P 		267.5
(-2.9)
P 		356.9
(0.7)
P 		148
C 361.5
(2.2)
P 		351.4
(1.7)
P 		260.1
(-2.7)
A 		253.7
(-3)
P 		301.9
(-0.7)
P 		377.7
(3)
P 		124
avr 389.7
(3) 		359.8
(1.7) 		281.8
(-1.7) 		252.7
(-3) 		292.8
(-1.2) 		361.9
(1.8) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 179
(3)
P 		91.8
(-2.4)
P 		82.4
(-3)
P 		110.5
(-1.3)
M 		97
B 149.7
(2.9)
P 		97.1
(-2.8)
P 		94.8
(-3)
P 		150.6
(3)
P 		56
C 201.2
(3)
P 		113
(-3)
P 		119.3
(-2.6)
P 		132
(-1.7)
P 		88
avr 176.6
(3) 		100.6
(-2.9) 		98.8
(-3) 		131
(-0.5) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 72.7
(-1.5)
P 		128.7
(3)
P 		54.8
(-3)
P 		60.6
(-2.5)
P 		93.2
(0.1)
P 		85.5
(-0.5)
P 		74
B 143.9
(3)
P 		121.8
(1.2)
P 		81.1
(-2.1)
P 		70.3
(-3)
P 		108.7
(0.1)
P 		133.1
(2.1)
P 		74
C 134
(3)
P 		107.2
(1.1)
P 		66.2
(-1.9)
A 		51
(-3)
P 		97.7
(0.4)
P 		126.4
(2.5)
P 		83
avr 116.9
(2.8) 		119.2
(3) 		67.4
(-2.3) 		60.6
(-3) 		99.9
(1) 		115
(2.6) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18459
Sequence Type Exemplar sequence
Representative Public ID K03E6.7 NCBI
Target Description K03E6.7 /REP_DB=WormBase Gene ID /WP=CE07333 /TR=Q21194 /GB=AAC69046.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075805
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075805 NCBI Caenorhabditis elegans K03E6.7 (K03E6.7) mRNA, complete cds. None
SNAP00000010593 ENSEMBL cdna:SNAP chromosome:CEL140:X:1084543:1088099:-1 None
GENEFINDER00000010596 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1084543:1088099:-1 None
K03E6.7.1 ENSEMBL cdna:known chromosome:CEL140:X:1084224:1088147:-1 gene:K03E6.7 None
K03E6.7.2 ENSEMBL cdna:known chromosome:CEL140:X:1084227:1088145:-1 gene:K03E6.7 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1082197-1088099(-) 94.73 100.0
Public Domain and Genome References
Gene Title
Ensembl K03E6.7
Entrez Gene 180461 Entrez gene
SwissProt Q21194 EMBL-EBI
WormBase CE31197 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588464_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE:1585877_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE_2:CFA.1088.1.A1_S_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE_2:CFA.20745.1.S1_S_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE_2:CFA.2341.1.A1_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
CANINE_2:CFAAFFX.9996.1.S1_AT similar to SH3 domain-binding protein 5 (SH3 domain-binding protein that preferentially associates with BTK) cfa
DROSOPHILA_2:1637004_AT parcas dm
DROSGENOME1:152264_AT parcas dm
CHICKEN:GGAAFFX.12494.1.S1_S_AT SH3-domain binding protein 5 (BTK-associated) gga
HG-U133A_2:201811_X_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133A:201811_X_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133_PLUS_2:201811_X_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133A_2:201810_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-FOCUS:201810_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133_PLUS_2:201810_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133A:201810_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBA:W56613_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBA:W38687_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBC:RC_AA421244_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBD:RC_C14585_F_AT SH3-domain binding protein 5 (BTK-associated) hs
U133_X3P:G4759057_3P_A_AT SH3-domain binding protein 5 (BTK-associated) hs
U133_X3P:HS.109150.0.S1_3P_S_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U95AV2:38968_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133_PLUS_2:227591_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U133B:227591_AT SH3-domain binding protein 5 (BTK-associated) hs
HU35KSUBB:RC_N66918_AT SH3-domain binding protein 5 (BTK-associated) hs
U133_X3P:HS.109150.1.A1_3P_AT SH3-domain binding protein 5 (BTK-associated) hs
HG-U95B:44587_AT SH3-domain binding protein 5 (BTK-associated) hs
MOUSE430A_2:1421922_AT SH3-domain binding protein 5 (BTK-associated) mm
MOE430A:1421922_AT SH3-domain binding protein 5 (BTK-associated) mm
MOUSE430_2:1421922_AT SH3-domain binding protein 5 (BTK-associated) mm
MG-U74AV2:98766_AT SH3-domain binding protein 5 (BTK-associated) mm
MOE430A:1421923_AT SH3-domain binding protein 5 (BTK-associated) mm
MOUSE430A_2:1421923_AT SH3-domain binding protein 5 (BTK-associated) mm
MOUSE430_2:1421923_AT SH3-domain binding protein 5 (BTK-associated) mm
MU19KSUBB:TC30856_AT SH3-domain binding protein 5 (BTK-associated), mRNA (cDNA clone MGC:7213 IMAGE:3482670) mm
MU19KSUBC:TC37003_AT SH3-domain binding protein 5 (BTK-associated), mRNA (cDNA clone MGC:7213 IMAGE:3482670) mm
RAE230A:1387294_AT SH3-domain binding protein 5 (BTK-associated) rn
RAT230_2:1387294_AT SH3-domain binding protein 5 (BTK-associated) rn
Protein Similarities
Method ID Description E-Value
blast AAC69046 Hypothetical protein K03E6.7 [Caenorhabditis elegans] ref|NP_508206.2| K03E6.7 [Caenorhabditis elegans] 0.0
blast CAE63574 Hypothetical protein CBG08062 [Caenorhabditis briggsae] 0.0
blast CAE63574 Hypothetical protein CBG08062 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR007940 EMBL-EBI SH3-binding 5 1.0E-126
Pfam IPR007940 EMBL-EBI SH3-binding 5 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183210_AT
acgaaattcgagatcccttggctccggagtcattctcctggcacagcagctgattggaaa
tggcaattcaactgaaaaacacaacattacaccgccgagacacggtgaagaagcagacat
cagctatcacacacgtccagttggcctttctgatggatctgacaactcggaagtctcttc
acttgcctcattcaacattggtgatgatgacactgtttcaaaaatgttgatgagtcattc
ggagttgataaaggagtgcgctgcaatcaaaattgaggcaatttcggtaattgccgttgc
caaaaaattccaaaaccggcaattgccgaaattgcaggttgccgataaattccgattgcc
gcgcactccaccgtgcaagccgcaaatcaaaaattcgacattgatctcattagacacttt
ccttgcaaatcaatcaatagtttttgaaatttcgatggccgtcggtgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAAATTCGAGATCCCTTGGCTCC 237 91 978 Antisense
TTCTCCTGGCACAGCAGCTGATTGG 320 691 1010 Antisense
ACAACATTACACCGCCGAGACACGG 7 113 1058 Antisense
GCAGACATCAGCTATCACACACGTC 13 313 1090 Antisense
AGTTGGCCTTTCTGATGGATCTGAC 121 65 1116 Antisense
CAACTCGGAAGTCTCTTCACTTGCC 526 187 1140 Antisense
CTTGCCTCATTCAACATTGGTGATG 177 219 1159 Antisense
ATTGCAGGTTGCCGATAAATTCCGA 550 1 1308 Antisense
TCCACCGTGCAAGCCGCAAATCAAA 407 589 1344 Antisense
GATCTCATTAGACACTTTCCTTGCA 586 419 1380 Antisense
GAAATTTCGATGGCCGTCGGTGAGC 274 363 1423 Antisense
Sequence Source Affymetrix Proprietary Database