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[183209_at]

Description F08F3.9 /REP_DB=WormBase Gene ID /WP=CE09264 /TR=Q22950 /GB=AAB04877.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 17.6
(-3)
A 		28
(-2.5)
A 		19.5
(-2.9)
A 		137.4
(3)
A 		120
B 20.7
(3)
A 		10.5
(-3)
A 		12.7
(-1.7)
A 		20.2
(2.7)
A 		10
C 17.4
(-3)
A 		20.7
(-2.6)
A 		20.7
(-2.6)
A 		61.9
(3)
A 		45
avr 18.6
(-2.9) 		19.7
(-2.8) 		17.6
(-3) 		73.2
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 7
(-3)
A 		17.6
(-2.7)
A 		26.3
(-2.5)
A 		50.3
(-1.9)
A 		81.7
(-1.1)
A 		242.3
(3)
P 		235
B 16.8
(-3)
A 		16
(-3)
A 		20.8
(-2.9)
A 		104.2
(-0.2)
A 		126.6
(0.5)
A 		208.2
(3)
P 		192
C 13.5
(-3)
A 		12.3
(-3)
A 		15.5
(-2.9)
A 		93.4
(-1.1)
A 		140.8
(0)
A 		266.7
(3)
P 		254
avr 12.4
(-3) 		15.3
(-2.9) 		20.9
(-2.8) 		82.6
(-1.1) 		116.4
(-0.2) 		239.1
(3) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.4
(-2.5)
A 		6.1
(-2.6)
A 		5.1
(-3)
A 		20.1
(3)
A 		15
B 6.6
(3)
A 		2.6
(-3)
A 		2.9
(-2.6)
A 		4.3
(-0.5)
A 		4
C 5.8
(-3)
A 		6
(-2.7)
A 		7.2
(-1.2)
A 		10.4
(3)
A 		5
avr 6.3
(-1.7) 		4.9
(-3) 		5.1
(-2.8) 		11.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 1.3
(-3)
A 		6.3
(-2.5)
A 		5.7
(-2.5)
A 		12.8
(-1.8)
A 		24.7
(-0.6)
A 		59
(3)
P 		58
B 5.9
(-2.9)
A 		5.3
(-3)
A 		5
(-3)
A 		27.6
(-1.1)
A 		51.4
(0.8)
A 		77.7
(3)
P 		73
C 5
(-2.9)
A 		3.7
(-3)
A 		3.9
(-3)
A 		18.8
(-1.9)
A 		45.5
(-0.1)
A 		89.3
(3)
P 		86
avr 4.1
(-3) 		5.1
(-2.9) 		4.9
(-2.9) 		19.7
(-1.7) 		40.5
(0.1) 		75.3
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11282
Sequence Type Exemplar sequence
Representative Public ID F08F3.9 NCBI
Target Description F08F3.9 /REP_DB=WormBase Gene ID /WP=CE09264 /TR=Q22950 /GB=AAB04877.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028602(11), NM_001028601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028602 NCBI Caenorhabditis elegans F08F3.9b (F08F3.9) mRNA, complete cds. 11/11 None
NM_001028601 NCBI Caenorhabditis elegans F08F3.9a (F08F3.9) mRNA, complete cds. 11/11 None
SNAP00000026686 ENSEMBL cdna:SNAP chromosome:CEL140:V:5437098:5438973:-1 11/11 None
GENEFINDER00000026693 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5437098:5438973:-1 11/11 None
F08F3.9b ENSEMBL cdna:known chromosome:CEL140:V:5437098:5438973:-1 gene:F08F3.9 11/11 None
F08F3.9a ENSEMBL cdna:known chromosome:CEL140:V:5437218:5438973:-1 gene:F08F3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5437097-5438973(-) 100.0 100.0
Public Domain and Genome References
Ensembl F08F3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ23119 Hypothetical protein F08F3.9b [Caenorhabditis elegans] ref|NP_001023773.1| F08F3.9b [Caenorhabditis elegans] 0.0
blast AAB04877 Hypothetical protein F08F3.9a [Caenorhabditis elegans] ref|NP_001023772.1| F08F3.9a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183209_AT
gagtctccagattcaaagtgccaattcttcttcaccattgtgctccacacctcctacaag
atccgagataaaggagaaggcgtatggatcaggattaaagttgacacgatccagaagaca
ctgcaccacatctgtcacgaaacttccatctgtgaaatttggcttcaaatcgatcgattc
ggtcgacgagatcagcaaaacggcgaaacgtaggaaagttgtcgacggcggagctccatc
gattccaaaagatgatattctaccatcgaatccgcctgtaaaacgatcacgacagaaaaa
atcgtcgtctattccgaagactgcgtgccctgaaatattgcttgcagctgaagagaagaa
gaacgctgtacccgatgatattctgcaattggcctcctcgaaaccagccatcaatcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCTCCAGATTCAAAGTGCCAAT 124 401 750 Antisense
GATCCAGAAGACACTGCACCACATC 593 415 857 Antisense
ACCACATCTGTCACGAAACTTCCAT 539 83 874 Antisense
GGAAAGTTGTCGACGGCGGAGCTCC 170 527 962 Antisense
CGGAGCTCCATCGATTCCAAAAGAT 475 243 978 Antisense
TCTACCATCGAATCCGCCTGTAAAA 637 611 1008 Antisense
ATCGTCGTCTATTCCGAAGACTGCG 657 33 1050 Antisense
GACTGCGTGCCCTGAAATATTGCTT 556 375 1068 Antisense
AACGCTGTACCCGATGATATTCTGC 33 147 1111 Antisense
GATGATATTCTGCAATTGGCCTCCT 307 411 1123 Antisense
CCTCGAAACCAGCCATCAATCTTGA 76 267 1145 Antisense
Sequence Source Affymetrix Proprietary Database