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[183208_at]

Description F34D10.3 /REP_DB=WormBase Gene ID /WP=CE00963 /TR=Q19993 /GB=CAA84315.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_highest_8_8 > 39      4grp_high_8_8 > 20      6grp_highest_nonorm > 52      6grp_total > 40      4grp_total > 20      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 572.6
(3)
P 		510.4
(-2.8)
P 		520.8
(-1.8)
P 		508
(-3)
P 		65
B 532
(-3)
P 		564.9
(-1.8)
P 		546.3
(-2.5)
P 		695.3
(3)
P 		163
C 548.4
(-0.2)
P 		563.1
(0.2)
P 		435.6
(-3)
P 		674.2
(3)
P 		239
avr 551
(-0.6) 		546.1
(-0.8) 		500.9
(-3) 		625.8
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 778
1 2 3 4 5 6 range
A 516.7
(-1.3)
P 		684.9
(-0)
P 		1075.8
(3)
P 		741.9
(0.4)
P 		410.7
(-2.1)
P 		297.7
(-3)
P 		778
B 446.1
(-0.8)
P 		689.4
(3)
P 		676.6
(2.8)
P 		674.5
(2.8)
P 		395.4
(-1.6)
P 		303.7
(-3)
P 		386
C 470.2
(-0.6)
P 		602.1
(1.3)
P 		694.8
(2.6)
P 		721
(3)
P 		442.9
(-1)
P 		303.3
(-3)
P 		418
avr 477.7
(-0.9) 		658.8
(1.2) 		815.7
(3) 		712.5
(1.8) 		416.3
(-1.7) 		301.6
(-3) 		514
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 208.5
(3)
P 		110.8
(-1.4)
P 		136.1
(-0.2)
P 		74.4
(-3)
P 		134
B 169.6
(3)
P 		139.5
(-1.2)
P 		126.6
(-3)
P 		148.2
(0)
P 		43
C 181.5
(3)
P 		161.9
(1.3)
P 		151.8
(0.4)
P 		113.7
(-3)
P 		68
avr 186.5
(3) 		137.4
(-1) 		138.2
(-0.9) 		112.1
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 95.2
(-2.2)
P 		243.6
(3)
P 		234.3
(2.7)
P 		188.2
(1.1)
P 		123.9
(-1.2)
P 		72.5
(-3)
P 		171
B 155.2
(-0.8)
P 		229.5
(3)
P 		164.3
(-0.4)
P 		178.7
(0.4)
P 		160.6
(-0.6)
P 		113.2
(-3)
P 		116
C 174.3
(2.3)
P 		183.7
(3)
P 		176.8
(2.5)
P 		145
(0.2)
P 		143.3
(0.1)
P 		101.5
(-3)
P 		82
avr 141.6
(-0.8) 		218.9
(3) 		191.8
(1.7) 		170.6
(0.6) 		142.6
(-0.7) 		95.7
(-3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7116
Sequence Type Exemplar sequence
Representative Public ID F34D10.3 NCBI
Target Description F34D10.3 /REP_DB=WormBase Gene ID /WP=CE00963 /TR=Q19993 /GB=CAA84315.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065356 NCBI Caenorhabditis elegans F34D10.3 (F34D10.3) mRNA, complete cds. 11/11 None
F34D10.3 ENSEMBL cdna:known chromosome:CEL140:III:3734238:3734824:1 gene:F34D10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033685 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3734270-3734824(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F34D10.3
Entrez Gene 175483 Entrez gene
SwissProt Q19993 EMBL-EBI
WormBase CE00963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84315 Hypothetical protein F34D10.3 [Caenorhabditis elegans] ref|NP_497757.1| F34D10.3 [Caenorhabditis elegans] 7.0E-82
blast CAE64490 Hypothetical protein CBG09215 [Caenorhabditis briggsae] 4.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497757.1 4 9-27,37-59,82-104,109-131
F34D10.3 4 9-27,37-59,82-104,109-131
Sequence
Target Sequence 
>C. ELEGANS:183208_AT
aaaagcgatctgtgtcttccttgaccttcttgccaccacgatttgtttggctctgttttt
ggataattcaagtggcgacaaacagtacattttcctttgtcttatagtttttgccacaga
cgctgcgtgcttcggagtgctcttttacaacatttactccgaattacgcacaaatggaca
gcaaaacctcggaatccgcgctttctggaactttttgtatccattcaataatgtttacac
aggacagttcgtatgcatcacttgcaaagtggttttcgaggttctcatcgcaattcggct
gacatttgcactttcaattccatatattgtctatttcatcccattttggatcttttgtgg
aataatttttgtcgatctcacgcggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCGATCTGTGTCTTCCTTGAC 650 131 33 Antisense
CCACCACGATTTGTTTGGCTCTGTT 451 273 65 Antisense
AACAGTACATTTTCCTTTGTCTTAT 43 137 113 Antisense
ATAGTTTTTGCCACAGACGCTGCGT 182 23 136 Antisense
GTGCTCTTTTACAACATTTACTCCG 671 479 169 Antisense
AGGACAGTTCGTATGCATCACTTGC 317 55 273 Antisense
AGTGGTTTTCGAGGTTCTCATCGCA 364 59 300 Antisense
TTCTCATCGCAATTCGGCTGACATT 561 691 314 Antisense
GGCTGACATTTGCACTTTCAATTCC 64 539 329 Antisense
ATTGTCTATTTCATCCCATTTTGGA 383 5 358 Antisense
TAATTTTTGTCGATCTCACGCGGAG 511 633 395 Antisense
Sequence Source Affymetrix Proprietary Database