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[183207_at]

Description D2096.3 /REP_DB=WormBase Gene ID /WP=CE04301 /TR=Q19004 /GB=AAA81491.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 57      6grp_total > 63      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1142
1 2 3 4 range
A 1716.7
(1.7)
P 		1447
(0)
P 		1934.4
(3)
P 		953.6
(-3)
P 		981
B 1632.4
(0.4)
P 		1758.8
(1.3)
P 		2002.3
(3)
P 		1134
(-3)
P 		868
C 1838.2
(1.6)
P 		1614.2
(0.4)
P 		2095.2
(3)
P 		984.5
(-3)
P 		1111
avr 1729.1
(1.3) 		1606.7
(0.5) 		2010.6
(3) 		1024
(-3) 		987

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1155
1 2 3 4 5 6 range
A 2034.2
(-3)
P 		2180.2
(-2.2)
P 		3188.7
(3)
P 		2240.6
(-1.9)
P 		2575.6
(-0.2)
P 		2455.1
(-0.8)
P 		1155
B 2324.1
(-2)
P 		2205
(-2.8)
P 		3048.5
(3)
P 		2671.3
(0.4)
P 		2173.4
(-3)
P 		2563.5
(-0.3)
P 		875
C 2039.9
(-3)
P 		2166.3
(-2.2)
P 		2986.1
(3)
P 		2506.9
(-0)
P 		2209.3
(-1.9)
P 		2309.9
(-1.3)
P 		946
avr 2132.7
(-3) 		2183.8
(-2.7) 		3074.4
(3) 		2472.9
(-0.8) 		2319.4
(-1.8) 		2442.8
(-1) 		942
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 625
(3)
P 		314.1
(-0.8)
P 		505.7
(1.5)
P 		139.6
(-3)
P 		485
B 520.5
(3)
P 		434.4
(1.1)
P 		464
(1.8)
P 		241.7
(-3)
P 		279
C 608.5
(1.7)
P 		464.1
(0.2)
P 		730.2
(3)
P 		166
(-3)
P 		564
avr 584.7
(3) 		404.2
(0.3) 		566.6
(2.7) 		182.4
(-3) 		402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 375
(-3)
P 		775.4
(3)
P 		694.4
(1.8)
P 		568.3
(-0.1)
P 		777.2
(3)
P 		597.7
(0.3)
P 		402
B 808.7
(-0.6)
P 		733.9
(-2.4)
P 		740.3
(-2.2)
P 		707.5
(-3)
P 		883
(1.2)
P 		955.9
(3)
P 		248
C 756.1
(2.6)
P 		661
(0.5)
P 		760
(2.7)
P 		504.1
(-3)
P 		714.9
(1.7)
P 		773.2
(3)
P 		269
avr 646.6
(-1.4) 		723.4
(0.9) 		731.6
(1.2) 		593.3
(-3) 		791.7
(3) 		775.6
(2.5) 		198
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10287
Sequence Type Exemplar sequence
Representative Public ID D2096.3 NCBI
Target Description D2096.3 /REP_DB=WormBase Gene ID /WP=CE04301 /TR=Q19004 /GB=AAA81491.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069018 NCBI Caenorhabditis elegans D2096.3 (D2096.3) mRNA, complete cds. 11/11 None
D2096.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:8366521:8375342:1 gene:D2096.3 11/11 None
D2096.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:8366570:8375344:1 gene:D2096.3 11/11 None
D2096.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:8366732:8375343:1 gene:D2096.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025672 7/11 Cross Hyb Matching Probes None
GENEFINDER00000025691 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8363452-8375335(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2096.3
Entrez Gene 177632 Entrez gene
SwissProt Q19004 EMBL-EBI
WormBase CE33610 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.9496.2.S1_A_AT similar to Maltase-glucoamylase, intestinal gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501419 D2096.3 [Caenorhabditis elegans] gb|AAO91743.1| Hypothetical protein D2096.3 [Caenorhabditis elegans] 0.0
blast CAE73745 Hypothetical protein CBG21275 [Caenorhabditis briggsae] 0.0
blast NP_494897 R05F9.12 [Caenorhabditis elegans] gb|AAA83174.3| Hypothetical protein R05F9.12 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000519 EMBL-EBI P-type trefoil domain 5.9E-13
Pfam IPR000322 EMBL-EBI Glycoside hydrolase, family 31 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183207_AT
ttcatgcgtatttcccatctgacacatggtactctcttcaaccagagacttacggacaaa
aaatgttctctggattcaatgacgtcaatgctccattgtcatcattgacacctgtattcg
tgaggggtggatttgttttgccacgtcaatcacctggaactactacaacagcttcaagat
tgagcccattcgaattgctgattacggtcaagacgaatgcagcttcttctggagatcttt
actatgatggaggagatgacctgattccaaatgatgatattgagcagcatccaagagttc
attggcaattctcatttacttcatctattgctggaggtgttttgactggaaactgtgaga
cttgtagtactgccgttcgcccgccaacccttgatatcatcgaaatccttggttacccgt
cttcgccaaactttaatgggttcaaacttgatggatcttctgtgacactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATGCGTATTTCCCATCTGACAC 161 689 4646 Antisense
TCTGACACATGGTACTCTCTTCAAC 410 609 4663 Antisense
AATGTTCTCTGGATTCAATGACGTC 68 165 4707 Antisense
GTCATCATTGACACCTGTATTCGTG 241 467 4743 Antisense
TTTTGCCACGTCAATCACCTGGAAC 695 677 4781 Antisense
GAATGCAGCTTCTTCTGGAGATCTT 502 331 4860 Antisense
GGCAATTCTCATTTACTTCATCTAT 233 535 4949 Antisense
TGAGACTTGTAGTACTGCCGTTCGC 251 569 5001 Antisense
GCCAACCCTTGATATCATCGAAATC 702 277 5028 Antisense
CATCGAAATCCTTGGTTACCCGTCT 646 181 5043 Antisense
ACTTGATGGATCTTCTGTGACACTT 144 105 5091 Antisense
Sequence Source Affymetrix Proprietary Database