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[183206_at]

Description F07C3.9 /REP_DB=WormBase Gene ID /WP=CE07030 /TR=Q19154 /GB=AAG24031.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 77      6grp_total > 75      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1409
1 2 3 4 range
A 1163.5
(-1.3)
P 		1466.1
(0)
P 		757.9
(-3)
P 		2167.1
(3)
P 		1409
B 1360.8
(-1.3)
P 		1421.7
(-0.9)
P 		1031.8
(-3)
P 		2163.3
(3)
P 		1132
C 1413.3
(-0.4)
P 		1375.1
(-0.6)
P 		842
(-3)
P 		2151.1
(3)
P 		1309
avr 1312.5
(-1) 		1421
(-0.5) 		877.2
(-3) 		2160.5
(3) 		1283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 740
1 2 3 4 5 6 range
A 1271.2
(0.6)
P 		1045.2
(-3)
P 		1425.9
(3)
P 		1320.4
(1.3)
P 		1338.2
(1.6)
P 		1391.5
(2.5)
P 		381
B 1303.3
(-0.6)
P 		1138.7
(-3)
P 		1365.6
(0.3)
P 		1511.9
(2.4)
P 		1409.3
(0.9)
P 		1550.3
(3)
P 		412
C 1088.3
(-2.6)
P 		1042.9
(-3)
P 		1198.9
(-1.7)
P 		1766.8
(2.9)
P 		1076.8
(-2.7)
P 		1782.8
(3)
P 		740
avr 1220.9
(-1.3) 		1075.6
(-3) 		1330.1
(0.1) 		1533
(2.5) 		1274.8
(-0.6) 		1574.9
(3) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 423.6
(3)
P 		318.3
(0.2)
P 		198.1
(-3)
P 		317.2
(0.2)
P 		226
B 433.9
(2.3)
P 		351.1
(0)
P 		239.1
(-3)
P 		461
(3)
P 		222
C 467.8
(3)
P 		395.4
(0.5)
P 		293.5
(-3)
P 		362.7
(-0.6)
P 		174
avr 441.8
(3) 		354.9
(0.4) 		243.6
(-3) 		380.3
(1.1) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 234.3
(-3)
P 		371.7
(1.9)
P 		310.5
(-0.3)
P 		334.9
(0.6)
P 		403.8
(3)
P 		338.8
(0.7)
P 		170
B 453.5
(-0)
P 		379
(-1.8)
P 		331.6
(-3)
P 		400.4
(-1.3)
P 		572.6
(2.9)
P 		578.1
(3)
P 		247
C 403.4
(-1)
P 		318.2
(-2.7)
P 		305.2
(-3)
P 		355.3
(-2)
P 		348.4
(-2.1)
P 		596.8
(3)
P 		292
avr 363.7
(-1.5) 		356.3
(-1.7) 		315.8
(-3) 		363.5
(-1.5) 		441.6
(1) 		504.6
(3) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11295
Sequence Type Exemplar sequence
Representative Public ID F07C3.9 NCBI
Target Description F07C3.9 /REP_DB=WormBase Gene ID /WP=CE07030 /TR=Q19154 /GB=AAG24031.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072996 NCBI Caenorhabditis elegans F07C3.9 (F07C3.9) mRNA, complete cds. 11/11 None
SNAP00000009711 ENSEMBL cdna:SNAP chromosome:CEL140:V:9256923:9257212:-1 11/11 None
GENEFINDER00000009735 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9256923:9257212:-1 11/11 None
F07C3.9 ENSEMBL cdna:known chromosome:CEL140:V:9256923:9257212:-1 gene:F07C3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9256922-9257212(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07C3.9
Entrez Gene 184127 Entrez gene
SwissProt Q19154 EMBL-EBI
WormBase CE07030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505397 F07C3.9 [Caenorhabditis elegans] gb|AAG24031.1| Hypothetical protein F07C3.9 [Caenorhabditis elegans] 4.0E-23
blast CAE72142 Hypothetical protein CBG19240 [Caenorhabditis briggsae] 4.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505397.1 1 23-45
F07C3.9 1 23-45
SNAP00000009711 1 23-45
GENEFINDER00000009735 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:183206_AT
tgccaagaaactacgctgacatcatcggccgtaacgctgatcgtctcatcaaaaaatatg
aacacattccaacaatcatttccgcagttacccttgtcattggaatctttgtatgtgcta
ttccggtcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCAAGAAACTACGCTGACATCAT 104 587 14 Antisense
AGAAACTACGCTGACATCATCGGCC 80 73 19 Antisense
GCTGATCGTCTCATCAAAAAATATG 98 297 49 Antisense
AACACATTCCAACAATCATTTCCGC 479 135 74 Antisense
ACATTCCAACAATCATTTCCGCAGT 604 103 77 Antisense
CAACAATCATTTCCGCAGTTACCCT 587 189 83 Antisense
TTCCGCAGTTACCCTTGTCATTGGA 177 697 93 Antisense
GCAGTTACCCTTGTCATTGGAATCT 224 287 97 Antisense
TACCCTTGTCATTGGAATCTTTGTA 340 649 102 Antisense
AATCTTTGTATGTGCTATTCCGGTC 19 171 117 Antisense
CTTTGTATGTGCTATTCCGGTCATC 230 223 120 Antisense
Sequence Source Affymetrix Proprietary Database