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[183203_at]

Description Y38A8.3 /REP_DB=WormBase Gene ID /WP=CE07572 /TR=Q23238 /GB=AAA98019.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 82      6grp_total > 49      4grp_total > 53      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 340.3
(3)
P 		238.4
(-1.5)
P 		284.1
(0.5)
P 		204.3
(-3)
P 		136
B 352.6
(3)
P 		275.1
(-1.5)
P 		250.1
(-3)
P 		272.5
(-1.7)
P 		103
C 284.5
(-1)
P 		373.3
(3)
P 		276.3
(-1.4)
P 		240.6
(-3)
P 		133
avr 325.8
(3) 		295.6
(0.9) 		270.2
(-0.8) 		239.1
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 408
(2.9)
P 		299.8
(-0.2)
P 		203.7
(-3)
P 		257.7
(-1.4)
P 		378.4
(2.1)
P 		410
(3)
P 		206
B 295.6
(-0)
P 		329.1
(2)
P 		306.1
(0.6)
P 		296.3
(0)
P 		245.2
(-3)
P 		346.3
(3)
P 		101
C 347.8
(-0)
P 		292.6
(-2)
P 		264
(-3)
P 		432.1
(3)
P 		275
(-2.6)
P 		360.3
(0.4)
P 		168
avr 350.5
(1.9) 		307.2
(-0.4) 		257.9
(-3) 		328.7
(0.7) 		299.5
(-0.8) 		372.2
(3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 123.9
(3)
P 		51.7
(-1.6)
P 		74.3
(-0.2)
P 		29.9
(-3)
P 		94
B 112.4
(3)
P 		67.9
(-1.9)
P 		57.9
(-3)
P 		58.1
(-3)
P 		55
C 94.2
(1.8)
P 		107.3
(3)
P 		96.3
(2)
P 		40.6
(-3)
P 		67
avr 110.2
(3) 		75.6
(-0.1) 		76.2
(-0) 		42.9
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 75.2
(-0.4)
P 		106.6
(2.3)
P 		44.4
(-3)
P 		65.3
(-1.2)
P 		114.2
(3)
P 		99.8
(1.8)
P 		70
B 102.8
(0.1)
P 		109.5
(0.9)
P 		74.3
(-3)
P 		78.5
(-2.5)
P 		99.6
(-0.2)
P 		129.1
(3)
P 		55
C 128.9
(3)
P 		89.3
(-0.9)
P 		67.2
(-3)
P 		86.9
(-1.1)
P 		89
(-0.9)
P 		120.6
(2.2)
P 		62
avr 102.3
(1.4) 		101.8
(1.4) 		62
(-3) 		76.9
(-1.4) 		100.9
(1.3) 		116.5
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4762
Sequence Type Exemplar sequence
Representative Public ID Y38A8.3 NCBI
Target Description Y38A8.3 /REP_DB=WormBase Gene ID /WP=CE07572 /TR=Q23238 /GB=AAA98019.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062513 NCBI Caenorhabditis elegans Ubiquitin-Like Protease family member (ulp-2) (ulp-2) mRNA, complete cds. 11/11 None
SNAP00000028506 ENSEMBL cdna:SNAP chromosome:CEL140:II:4955991:4959784:-1 11/11 None
GENEFINDER00000028508 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4955991:4959827:-1 11/11 None
Y38A8.3 ENSEMBL cdna:known chromosome:CEL140:II:4955631:4959836:-1 gene:Y38A8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4955988-4959800(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ulp-2
Ensembl Y38A8.3
Entrez Gene 173859 Entrez gene
SwissProt Q23238 EMBL-EBI
WormBase CE29374 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA98019 Ubiquitin-like protease protein 2 [Caenorhabditis elegans] ref|NP_494914.1| Ubiquitin-Like Protease family member (ulp-2) [Caenorhabditis elegans] 0.0
blast CAE59014 Hypothetical protein CBG02290 [Caenorhabditis briggsae] 1.0E-159
blast CAE59014 Hypothetical protein CBG02290 [Caenorhabditis briggsae] 1.0E-157
blast NP_172444 Ulp1 protease family protein [Arabidopsis thaliana] 2.0E-19
Protein Families
Method ID Description E-Value
ec 4HBT_PSEUC (P56653) 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) 8.6
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 4.90000009536743
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 2.9E-65
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 2.9E-65
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 2.9E-65
Sequence
Target Sequence 
>C. ELEGANS:183203_AT
agttgtcgtgactcgtgctgaaaacactccaatccaagacaacttttatgattgtggact
ttatgtattgcatttcattgaagggctcttctgttatccgaaccgtccggtcaatgtgaa
cgattttccaaactttgactggtcaaagttcttcccggaggccaataaaatgtgtgactt
gatgcgagacaaagtttacaatttgattcttcaacaagcggataaacctgcgagaagccg
tctcgccaagttcgaaagggagaacaaatgtggattgtcgcgtgaaggagctcttaggaa
agcacgtcgtcatagtgcagtgaatgaacgtcgtacgaaacggcacagagactattatgc
acgtcactattccttgagcccgccacaccgaaatgtgatgaacgatgatccgacgttcat
gaatccacgtggattggcggaaatgccaataactcgacttgttcgtcgcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGTCGTGACTCGTGCTGAAAAC 260 65 2268 Antisense
AACACTCCAATCCAAGACAACTTTT 659 133 2290 Antisense
TTGAAGGGCTCTTCTGTTATCCGAA 8 705 2345 Antisense
GTTATCCGAACCGTCCGGTCAATGT 669 435 2360 Antisense
TTGACTGGTCAAAGTTCTTCCCGGA 398 703 2402 Antisense
GGATAAACCTGCGAGAAGCCGTCTC 600 509 2487 Antisense
GCCGTCTCGCCAAGTTCGAAAGGGA 377 281 2504 Antisense
GGATTGTCGCGTGAAGGAGCTCTTA 117 509 2539 Antisense
TTATGCACGTCACTATTCCTTGAGC 540 679 2622 Antisense
AGCCCGCCACACCGAAATGTGATGA 118 83 2644 Antisense
AATAACTCGACTTGTTCGTCGCCTC 40 171 2715 Antisense
Sequence Source Affymetrix Proprietary Database