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[183202_at]

Description C45H4.6 /REP_DB=WormBase Gene ID /WP=CE08739 /TR=O44701 /GB=AAC25872.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 28      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 19.5
(-3)
A 		45.7
(-1.2)
A 		53.3
(-0.7)
A 		106.1
(3)
A 		87
B 67.8
(3)
A 		50.3
(1.3)
A 		4.3
(-3)
A 		50.8
(1.4)
A 		64
C 70.8
(2.3)
A 		74.1
(2.6)
A 		16.2
(-3)
A 		78.3
(3)
A 		62
avr 52.7
(0.1) 		56.7
(0.6) 		24.6
(-3) 		78.4
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 81.1
(3)
A 		42.2
(-0.1)
A 		39.4
(-0.3)
A 		5.9
(-3)
A 		39.1
(-0.4)
A 		45
(0.1)
A 		75
B 36
(-1.6)
A 		79.5
(3)
A 		37
(-1.5)
A 		23
(-3)
A 		48
(-0.3)
A 		28.3
(-2.4)
A 		57
C 45.4
(2.7)
A 		47.4
(3)
A 		19.9
(-0.9)
A 		7.2
(-2.7)
A 		5.4
(-3)
A 		21.9
(-0.6)
A 		42
avr 54.2
(2.7) 		56.4
(3) 		32.1
(-0.3) 		12
(-3) 		30.8
(-0.5) 		31.7
(-0.3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7.1
(-3)
A 		9.9
(-1)
A 		13.9
(1.9)
A 		15.5
(3)
A 		8
B 21.6
(3)
A 		12.4
(0.3)
A 		1
(-3)
A 		10.8
(-0.1)
A 		21
C 23.4
(3)
A 		21.3
(2.3)
A 		5.7
(-3)
A 		13.2
(-0.5)
A 		18
avr 17.4
(3) 		14.5
(1.3) 		6.9
(-3) 		13.2
(0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15
(3)
A 		15
(3)
A 		8.6
(0.2)
A 		1.5
(-3)
A 		11.8
(1.6)
A 		11
(1.2)
A 		14
B 12.5
(-1.1)
A 		26.4
(3)
A 		9
(-2.1)
A 		6.1
(-3)
A 		19.5
(1)
A 		10.5
(-1.7)
A 		20
C 16.8
(3)
A 		14.4
(2.1)
A 		5.1
(-1.6)
A 		1.4
(-3)
A 		1.7
(-2.9)
A 		7.3
(-0.7)
A 		15
avr 14.8
(1.5) 		18.6
(3) 		7.6
(-1.2) 		3
(-3) 		11
(0.1) 		9.6
(-0.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183202_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15695
Sequence Type Exemplar sequence
Representative Public ID C45H4.6 NCBI
Target Description C45H4.6 /REP_DB=WormBase Gene ID /WP=CE08739 /TR=O44701 /GB=AAC25872.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071188
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000009356 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2169134:2170496:1 None
NM_071188 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-18) (srbc-18) mRNA, complete cds. None
C45H4.6 ENSEMBL cdna:known chromosome:CEL140:V:2169134:2170496:1 gene:C45H4.6 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2168356-2170560(+) 85.43 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-18
Ensembl C45H4.6
Entrez Gene 183487 Entrez gene
SwissProt O44701 EMBL-EBI
WormBase CE38049 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25872 Serpentine receptor, class bc (class b-like) protein 18 [Caenorhabditis elegans] ref|NP_503589.2| Serpentine Receptor, class BC (class B-like) family member (srbc-18) [Caenorhabditis elegans] 1.0E-160
blast AAC25872 Serpentine receptor, class bc (class b-like) protein 18 [Caenorhabditis elegans] ref|NP_503589.2| Serpentine Receptor, class BC (class B-like) family member (srbc-18) [Caenorhabditis elegans] 1.0E-126
blast CAE74165 Hypothetical protein CBG21838 [Caenorhabditis briggsae] 5.0E-75
blast CAE74168 Hypothetical protein CBG21841 [Caenorhabditis briggsae] 1.0E-69
blast CAE74165 Hypothetical protein CBG21838 [Caenorhabditis briggsae] 5.0E-57
blast AAC25879 Serpentine receptor, class bc (class b-like) protein 19 [Caenorhabditis elegans] ref|NP_503588.1| Serpentine Receptor, class BC (class B-like) family member (srbc-19) [Caenorhabditis elegans] 2.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.7E-98
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 5.3E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503589.2 7 11-33,46-68,83-105,125-147,181-200,212-234,249-271
C45H4.6 7 11-33,46-68,83-105,125-147,181-200,212-234,249-271
GENEFINDER00000009356 5 10-32,45-67,163-182,194-216,231-253
Sequence
Target Sequence 
>C. ELEGANS:183202_AT
gcagtttacagtcccatattctatcacaactatcgcaaactctgtccgtcaatctttata
ctattaatcgcagtttcttacggattagctgaaaatctagtgctacacgctgtctgtaat
tacacaatttatttgtctgaaaactgcgcagcactgggatgtgctgtgaactcttgtttc
aacaagtactggactatcaattttatttgtattgatatttttgttctctgccatattgtt
tttgaaactaacaattttgaagaagaatacagtgaacaaaaacttgtcaagagtcaatta
cttagctattatggactcaattgttatgctcttgttcgattttcttccaaacttcacagc
aaattacttttcgaatctcaaatttctcagctttcaggtatgtctcaaacttcaccgaaa
ccatttaaaaatttatatttaaagatcgccggaccctacgtcacagttgtaaagatgttt
ggaagtgcatccgaggcatacttggtgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTTTACAGTCCCATATTCTATC 153 313 637 Antisense
CACAACTATCGCAAACTCTGTCCGT 662 193 661 Antisense
AACTCTGTCCGTCAATCTTTATACT 245 141 674 Antisense
AAATCTAGTGCTACACGCTGTCTGT 80 117 729 Antisense
GGGATGTGCTGTGAACTCTTGTTTC 569 495 792 Antisense
ATTTTTGTTCTCTGCCATATTGTTT 450 15 853 Antisense
TATGCTCTTGTTCGATTTTCTTCCA 515 657 961 Antisense
ATTTCTCAGCTTTCAGGTATGTCTC 226 17 1018 Antisense
GTATGTCTCAAACTTCACCGAAACC 262 455 1034 Antisense
TATTTAAAGATCGCCGGACCCTACG 441 257 1072 Antisense
GCATCCGAGGCATACTTGGTGTTTC 386 309 1123 Antisense
Sequence Source Affymetrix Proprietary Database