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[183201_at]

Description M02D8.1 /REP_DB=WormBase Gene ID /WP=CE04757 /TR=Q21465 /GB=AAA82383.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 26      6grp_total > 31      4grp_total > 59      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6565
1 2 3 4 range
A 3847.5
(0.1)
P 		6980.5
(3)
P 		6563.6
(2.6)
P 		415.3
(-3)
P 		6565
B 4035.3
(0.4)
P 		6840.6
(3)
P 		6602.4
(2.8)
P 		455.6
(-3)
P 		6385
C 3722.9
(0.2)
P 		6511.6
(2.9)
P 		6617.4
(3)
P 		471.1
(-3)
P 		6146
avr 3868.6
(0.2) 		6777.6
(3) 		6594.5
(2.8) 		447.3
(-3) 		6330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5208
1 2 3 4 5 6 range
A 4508.8
(-0.2)
P 		5810.6
(1.5)
P 		6981.5
(3)
P 		5432.3
(1)
P 		3922.6
(-1)
P 		2413.8
(-3)
P 		4568
B 4362.7
(-0.9)
P 		5833.2
(0.8)
P 		7621.3
(3)
P 		5705.5
(0.7)
P 		4416.9
(-0.9)
P 		2653.5
(-3)
P 		4968
C 4130.6
(-1.1)
P 		6322.7
(2.6)
P 		6562
(3)
P 		5271.5
(0.8)
P 		3764.9
(-1.7)
P 		2990.5
(-3)
P 		3572
avr 4334
(-0.7) 		5988.8
(1.5) 		7054.9
(3) 		5469.8
(0.8) 		4034.8
(-1.1) 		2685.9
(-3) 		4369
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2246
1 2 3 4 range
A 1400.9
(1.9)
P 		1515.3
(2.3)
P 		1715.8
(3)
P 		60.8
(-3)
P 		1655
B 1286.8
(1.5)
P 		1689.5
(3)
P 		1529.9
(2.4)
P 		97.1
(-3)
P 		1592
C 1232.4
(0.1)
P 		1872.1
(1.8)
P 		2306.4
(3)
P 		79.4
(-3)
P 		2227
avr 1306.7
(1.2) 		1692.3
(2.5) 		1850.7
(3) 		79.1
(-3) 		1772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1479
1 2 3 4 5 6 range
A 831.2
(-2)
P 		2066.5
(3)
P 		1520.4
(0.8)
P 		1377.8
(0.2)
P 		1183.7
(-0.6)
P 		587.7
(-3)
P 		1479
B 1518
(0.3)
P 		1941.6
(3)
P 		1850.7
(2.4)
P 		1511.2
(0.3)
P 		1794.5
(2.1)
P 		989.5
(-3)
P 		952
C 1531
(0.4)
P 		1929.3
(3)
P 		1670.2
(1.3)
P 		1060.1
(-2.6)
P 		1218.3
(-1.6)
P 		1001.1
(-3)
P 		928
avr 1293.4
(-0.7) 		1979.1
(3) 		1680.4
(1.4) 		1316.4
(-0.6) 		1398.8
(-0.1) 		859.4
(-3) 		1120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16911
Sequence Type Exemplar sequence
Representative Public ID M02D8.1 NCBI
Target Description M02D8.1 /REP_DB=WormBase Gene ID /WP=CE04757 /TR=Q21465 /GB=AAA82383.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077084 NCBI Caenorhabditis elegans M02D8.1 (M02D8.1) mRNA, complete cds. 11/11 None
SNAP00000039683 ENSEMBL cdna:SNAP chromosome:CEL140:X:8763847:8765988:1 11/11 None
GENEFINDER00000039689 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8763847:8765988:1 11/11 None
M02D8.1 ENSEMBL cdna:known chromosome:CEL140:X:8763847:8766163:1 gene:M02D8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8763845-8765987(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02D8.1
Entrez Gene 181123 Entrez gene
SwissProt Q21465 EMBL-EBI
WormBase CE04757 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509485 M02D8.1 [Caenorhabditis elegans] gb|AAA82383.1| Hypothetical protein M02D8.1 [Caenorhabditis elegans] 1.0E-100
blast CAE69354 Hypothetical protein CBG15443 [Caenorhabditis briggsae] 7.0E-95
blast XP_624804 PREDICTED: similar to CG32019-PA, isoform A [Apis mellifera] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-4
Sequence
Target Sequence 
>C. ELEGANS:183201_AT
agagaacgggtcggtgttccttgaggtcatcgtcactggagctgatgtttctaagattca
gtggtttttcggaccagacgagcttgaggagaacgagttcctgaagttctcaaacagtga
cgaaggaggcaaccgcaccaagtttgttgccgaaatcaaggactttgataaaccacttgc
cggagaatacaaagccgtctttgccaacgccgatggagagaacagctctaacttcacagt
cgcagcaggaaacgccccagacttccatgacaagccacatattgttcaaagagataacgg
aaatgtgattgtgattaaggtccgcgcaaagtcccaccttgagatgaaggccgaatggtt
caaggatgaaaaaccagtgaaattcactgaccgagttaaggctgttgtaaagaaggacga
taaggacaaagacggattccaattcctactcgaaatcaccggaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGAACGGGTCGGTGTTCCTTGAG 254 53 54 Antisense
TGAGGTCATCGTCACTGGAGCTGAT 569 567 75 Antisense
CAACCGCACCAAGTTTGTTGCCGAA 343 187 183 Antisense
AGGACTTTGATAAACCACTTGCCGG 20 55 212 Antisense
CGTCTTTGCCAACGCCGATGGAGAG 691 245 249 Antisense
AGAACAGCTCTAACTTCACAGTCGC 233 73 272 Antisense
TTCACAGTCGCAGCAGGAAACGCCC 367 681 286 Antisense
AGACTTCCATGACAAGCCACATATT 123 71 312 Antisense
TGATTAAGGTCCGCGCAAAGTCCCA 89 545 365 Antisense
AAGACGGATTCCAATTCCTACTCGA 593 153 482 Antisense
TTCCTACTCGAAATCACCGGACCAC 252 693 496 Antisense
Sequence Source Affymetrix Proprietary Database