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[183199_at]

Description F59A1.12 /REP_DB=WormBase Gene ID /WP=CE18796 /TR=Q9XUW4 /GB=CAB04529.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 39.7
(-2.1)
P 		28.4
(-3)
A 		37.3
(-2.3)
A 		107.9
(3)
A 		80
B 34
(-1.5)
A 		39.7
(-0.7)
A 		23.5
(-3)
A 		65.1
(3)
A 		42
C 50.4
(3)
P 		30.5
(-0.5)
A 		16.7
(-3)
A 		24.1
(-1.7)
A 		34
avr 41.4
(-0.7) 		32.9
(-1.9) 		25.8
(-3) 		65.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 18.7
(-2.2)
A 		39.4
(1.1)
A 		19.3
(-2.1)
A 		25
(-1.1)
A 		51
(3)
A 		13.4
(-3)
A 		38
B 43.5
(3)
P 		27.2
(-0)
A 		23.2
(-0.8)
A 		23.4
(-0.7)
A 		25.2
(-0.4)
A 		11.3
(-3)
A 		32
C 25
(-1.3)
A 		9.6
(-2.6)
A 		5
(-3)
A 		74.5
(3)
A 		49.9
(0.9)
A 		13.8
(-2.2)
A 		70
avr 29.1
(0.3) 		25.4
(-0.4) 		15.8
(-2.4) 		41
(2.8) 		42
(3) 		12.8
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.4
(2.1)
P 		6.2
(-3)
A 		9.8
(-0.8)
A 		15.8
(3)
A 		10
B 10.9
(0.9)
A 		9.8
(0.1)
A 		5.4
(-3)
A 		13.9
(3)
A 		9
C 16.7
(3)
P 		8.8
(-0.8)
A 		5.8
(-2.2)
A 		4.1
(-3)
A 		13
avr 14
(3) 		8.3
(-1.9) 		7
(-3) 		11.3
(0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.4
(-3)
A 		14
(2.3)
A 		4.2
(-2.6)
A 		6.3
(-1.5)
A 		15.4
(3)
A 		3.3
(-3)
A 		12
B 15.1
(3)
P 		9
(-0.4)
A 		5.6
(-2.2)
A 		6.2
(-1.9)
A 		10.2
(0.3)
A 		4.2
(-3)
A 		11
C 9.3
(0.2)
A 		2.9
(-2.4)
A 		1.3
(-3)
A 		15
(2.5)
A 		16.2
(3)
A 		4.6
(-1.7)
A 		15
avr 9.3
(0.3) 		8.6
(-0.1) 		3.7
(-3) 		9.2
(0.2) 		13.9
(3) 		4
(-2.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14574
Sequence Type Exemplar sequence
Representative Public ID F59A1.12 NCBI
Target Description F59A1.12 /REP_DB=WormBase Gene ID /WP=CE18796 /TR=Q9XUW4 /GB=CAB04529.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075070 NCBI Caenorhabditis elegans F59A1.12 (F59A1.12) mRNA, complete cds. 11/11 None
GENEFINDER00000002331 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17664389:17670352:-1 11/11 None
F59A1.12 ENSEMBL cdna:known chromosome:CEL140:V:17667334:17670352:-1 gene:F59A1.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17667333-17670352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A1.12
Entrez Gene 186564 Entrez gene
SwissProt Q9XUW4 EMBL-EBI
WormBase CE18796 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04529 Hypothetical protein F59A1.12 [Caenorhabditis elegans] ref|NP_507471.1| F59A1.12 [Caenorhabditis elegans] 0.0
blast CAB04530 Hypothetical protein F59A1.11 [Caenorhabditis elegans] ref|NP_507470.2| F59A1.11 [Caenorhabditis elegans] 1.0E-129
blast CAE61733 Hypothetical protein CBG05684 [Caenorhabditis briggsae] 1.0E-103
blast CAB04530 Hypothetical protein F59A1.11 [Caenorhabditis elegans] ref|NP_507470.2| F59A1.11 [Caenorhabditis elegans] 5.0E-59
blast CAE61733 Hypothetical protein CBG05684 [Caenorhabditis briggsae] 1.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507471.1 7 36-55,68-90,110-132,145-162,229-251,305-327,337-356
F59A1.12 7 36-55,68-90,110-132,145-162,229-251,305-327,337-356
GENEFINDER00000002331 8 36-55,229-251,309-331,338-360,380-402,491-513,575-597,610-632
Sequence
Target Sequence 
>C. ELEGANS:183199_AT
actgtatggctttacctctgatggtaattggaatgtatggagatatcagtgattcgtata
gttttgtcgagatccaaacattgaacattaactatgtgaaaattggccacccgttttggc
agttttctacaaatgaaaaattggtgtatacccttacaatggagagtttttcctcgagta
cccaagattttttgatgcttttcaatcttcatagaatatttatcattaaaaaaaaaagtc
ttaccctcctgtacggcattgctattcctctgatgcttctcggaccacttatctactcct
atttcgctgagtcagttataagttccggaaaagttatggacatattcttcaagcacagtc
gggtccccattatcactacagttatcacaatatgctttgaagaactcaagaaagagttcg
cgaaaaacagttcctattcggaaaagacgaaaaagttgcagcagaaattaagctggagca
ttatgtctcaggtggttatgctatcagtgattgtgattattataaccgtcattcctaata
tgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGTATGGCTTTACCTCTGATGGT 698 97 458 Antisense
GAAAATTGGCCACCCGTTTTGGCAG 519 257 555 Antisense
TGGAGAGTTTTTCCTCGAGTACCCA 343 545 617 Antisense
TGTACGGCATTGCTATTCCTCTGAT 507 559 707 Antisense
ACTTATCTACTCCTATTTCGCTGAG 425 103 744 Antisense
CGCTGAGTCAGTTATAAGTTCCGGA 379 253 762 Antisense
ATATTCTTCAAGCACAGTCGGGTCC 205 1 799 Antisense
GTCCCCATTATCACTACAGTTATCA 491 475 820 Antisense
AAGCTGGAGCATTATGTCTCAGGTG 154 151 927 Antisense
GTCTCAGGTGGTTATGCTATCAGTG 103 469 942 Antisense
ATAACCGTCATTCCTAATATGTTGT 354 25 979 Antisense
Sequence Source Affymetrix Proprietary Database