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[183195_at]

Description Y15E3A.3 /REP_DB=WormBase Gene ID /WP=CE24174 /TR=Q9U2R4 /GB=CAB60331.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 50      4grp_high_8_8 > 20      6grp_total > 50      4grp_total > 12      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 63.4
(-1.2)
P 		33.2
(-3)
A 		33.8
(-3)
A 		135.9
(3)
P 		103
B 77.4
(2)
P 		74
(0.9)
P 		62.4
(-3)
M 		80.3
(3)
P 		18
C 79.2
(-0.4)
P 		65.4
(-1.7)
P 		50.8
(-3)
P 		117.1
(3)
P 		66
avr 73.3
(-0.7) 		57.5
(-2.2) 		49
(-3) 		111.1
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 57.4
(-0.5)
M 		31.3
(-3)
P 		90.9
(2.7)
P 		94.1
(3)
P 		67.3
(0.4)
P 		57.1
(-0.5)
P 		63
B 79.1
(3)
P 		63.4
(0.6)
P 		64
(0.7)
P 		66.8
(1.1)
P 		40.5
(-3)
P 		41.4
(-2.9)
P 		39
C 54.6
(0.3)
P 		77.6
(3)
P 		64.2
(1.4)
P 		63.5
(1.3)
P 		52.1
(-0)
P 		26.9
(-3)
P 		51
avr 63.7
(1) 		57.4
(-0.2) 		73
(2.7) 		74.8
(3) 		53.3
(-0.9) 		41.8
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 23.1
(3)
P 		7.2
(-3)
A 		8.8
(-2.4)
A 		19.9
(1.8)
P 		16
B 24.7
(3)
P 		18.3
(-0.8)
P 		14.5
(-3)
M 		17.1
(-1.5)
P 		10
C 26.2
(3)
P 		18.8
(-2.2)
P 		17.7
(-3)
P 		19.7
(-1.6)
P 		9
avr 24.7
(3) 		14.8
(-2.4) 		13.7
(-3) 		18.9
(-0.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 10.6
(-3)
M 		11.1
(-2.8)
P 		19.8
(1.2)
P 		23.9
(3)
P 		20.3
(1.4)
P 		13.9
(-1.5)
P 		13
B 27.5
(3)
P 		21.1
(-0.2)
P 		15.5
(-3)
P 		17.7
(-1.9)
P 		16.5
(-2.5)
P 		15.4
(-3)
P 		12
C 20.2
(1.6)
P 		23.7
(3)
P 		16.3
(-0)
P 		12.8
(-1.4)
P 		16.8
(0.2)
P 		9
(-3)
P 		15
avr 19.4
(3) 		18.6
(2.3) 		17.2
(1) 		18.1
(1.8) 		17.9
(1.6) 		12.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18020
Sequence Type Exemplar sequence
Representative Public ID Y15E3A.3 NCBI
Target Description Y15E3A.3 /REP_DB=WormBase Gene ID /WP=CE24174 /TR=Q9U2R4 /GB=CAB60331.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078137 NCBI Caenorhabditis elegans Y15E3A.3 (Y15E3A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000023759 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15322166:15326485:-1 11/11 None
Y15E3A.3 ENSEMBL cdna:known chromosome:CEL140:X:15322166:15326485:-1 gene:Y15E3A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023753 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15322165-15326485(-) 94.61 100.0
Public Domain and Genome References
Gene Title
Ensembl Y15E3A.3
Entrez Gene 189439 Entrez gene
SwissProt Q9U2R4 EMBL-EBI
WormBase CE38233 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60331 Hypothetical protein Y15E3A.3 [Caenorhabditis elegans] ref|NP_510538.2| Y15E3A.3 [Caenorhabditis elegans] 0.0
blast CAE63298 Hypothetical protein CBG07684 [Caenorhabditis briggsae] 0.0
blast CAE63298 Hypothetical protein CBG07684 [Caenorhabditis briggsae] 1.0E-180
Sequence
Target Sequence 
>C. ELEGANS:183195_AT
gagtatcttggctcatttcctgatattgaaattacagcagccagacttgaaaaagcccta
tgtcacatttccttattacaattcctatacaaagaagatattagtgactggacccggaaa
acatatttatacctattggacctgttctctacaatccttgcccatgaaataacaaaaaag
tcaaacttcatgacaaactacagcccggagaataaagtcggaccaatttgcgcgagtttc
aagaaagttgtgcaaaagctcgtcagcgtgagtcgtgaggtttttgagacgcaagaggac
tggtctgcaaccaacaaagtttcgttttcgttttacatagttggaatactggaagaagaa
attgatgtaagattagatgtaagcattattgagaaagttgaagaaatgaatagcgaagct
agagacatgagcctggatagaagtgcaatgcaagcgacaaaagtgattttgacagaactg
gatgcatatctgcaggaaaaatgtctagaaagtgcagtggagagtggaaatcttgagtct
cttcgaagccttgctgcaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTATCTTGGCTCATTTCCTGATA 632 397 1279 Antisense
AAAAGCCCTATGTCACATTTCCTTA 700 129 1329 Antisense
GTCACATTTCCTTATTACAATTCCT 493 465 1340 Antisense
ATACCTATTGGACCTGTTCTCTACA 159 23 1407 Antisense
TACAATCCTTGCCCATGAAATAACA 126 643 1428 Antisense
ACTTCATGACAAACTACAGCCCGGA 481 103 1463 Antisense
AGTCGGACCAATTTGCGCGAGTTTC 286 61 1494 Antisense
AGCTCGTCAGCGTGAGTCGTGAGGT 183 81 1535 Antisense
GACGCAAGAGGACTGGTCTGCAACC 137 381 1566 Antisense
GAGTGGAAATCTTGAGTCTCTTCGA 645 401 1800 Antisense
TCTCTTCGAAGCCTTGCTGCAACTA 388 611 1816 Antisense
Sequence Source Affymetrix Proprietary Database