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[183194_s_at]

Description F08F3.6 /REP_DB=WormBase Gene ID /WP=CE09261 /TR=Q22946 /GB=AAB04872.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 23.3
(-1.8)
A 		52.5
(0.1)
A 		5.3
(-3)
A 		98.1
(3)
A 		93
B 57.2
(3)
A 		9.7
(-3)
A 		11.9
(-2.7)
A 		13.8
(-2.5)
A 		48
C 14.7
(-2)
A 		49
(3)
A 		10.4
(-2.6)
A 		7.9
(-3)
A 		41
avr 31.7
(1.4) 		37.1
(2.5) 		9.2
(-3) 		39.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 17.9
(-2.8)
A 		26
(-2.7)
A 		6.7
(-3)
A 		8.5
(-3)
A 		145.2
(-0.5)
P 		341
(3)
P 		334
B 5.9
(-3)
A 		47.5
(-2.3)
A 		50.5
(-2.3)
A 		10.7
(-2.9)
A 		155.5
(-0.6)
P 		385.3
(3)
P 		379
C 8.3
(-3)
A 		39.5
(-2.5)
A 		10.9
(-3)
A 		54.6
(-2.3)
A 		205.6
(-0)
P 		405.1
(3)
P 		397
avr 10.7
(-3) 		37.7
(-2.6) 		22.7
(-2.8) 		24.6
(-2.8) 		168.8
(-0.4) 		377.1
(3) 		366
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.5
(0.3)
A 		11.4
(1.6)
A 		1.4
(-3)
A 		14.4
(3)
A 		13
B 18.2
(3)
A 		2.4
(-3)
A 		2.8
(-2.8)
A 		2.9
(-2.8)
A 		16
C 4.9
(-1.3)
A 		14.1
(3)
A 		3.6
(-1.9)
A 		1.3
(-3)
A 		13
avr 10.5
(3) 		9.3
(2.1) 		2.6
(-3) 		6.2
(-0.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 3.3
(-2.9)
A 		9.3
(-2.4)
A 		1.5
(-3)
A 		2.2
(-2.9)
A 		43.8
(0.1)
P 		83
(3)
P 		82
B 2
(-3)
A 		15.8
(-2.4)
A 		12.3
(-2.6)
A 		2.8
(-3)
A 		63.2
(-0.4)
P 		143.7
(3)
P 		142
C 3.1
(-3)
A 		12
(-2.6)
A 		2.8
(-3)
A 		11
(-2.6)
A 		66.5
(-0.1)
P 		135.6
(3)
P 		133
avr 2.8
(-3) 		12.4
(-2.5) 		5.5
(-2.9) 		5.3
(-2.9) 		57.8
(-0.2) 		120.8
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183194_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11689
Sequence Type Exemplar sequence
Representative Public ID F08F3.6 NCBI
Target Description F08F3.6 /REP_DB=WormBase Gene ID /WP=CE09261 /TR=Q22946 /GB=AAB04872.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072033 NCBI Caenorhabditis elegans F08F3.6 (F08F3.6) mRNA, complete cds. 11/11 None
SNAP00000026681 ENSEMBL cdna:SNAP chromosome:CEL140:V:5418054:5419773:-1 11/11 None
GENEFINDER00000026694 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5418054:5419827:-1 11/11 None
F08F3.6 ENSEMBL cdna:known chromosome:CEL140:V:5417920:5419797:-1 gene:F08F3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5418053-5419773(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08F3.6
Entrez Gene 178925 Entrez gene
SwissProt Q22946 EMBL-EBI
WormBase CE09261 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04872 Hypothetical protein F08F3.6 [Caenorhabditis elegans] ref|NP_504434.1| F08F3.6 [Caenorhabditis elegans] 0.0
blast CAB07666 Hypothetical protein T10C6.10 [Caenorhabditis elegans] ref|NP_507030.1| T10C6.10 [Caenorhabditis elegans] 2.0E-58
blast CAE65610 Hypothetical protein CBG10639 [Caenorhabditis briggsae] 2.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-4
Sequence
Target Sequence 
>C. ELEGANS:183194_S_AT
ttgtcgttgactttcaattccgcatagattattttgatcctactgagatcttcactcgaa
accgtgtgtgcttcatcaatggagactggataacttgtgatatactcctaagactgaatt
tcactcgactcgtgctggcctctcacaagcttactactcaagatatgaacgcgttcatca
ggagctgggtgtccggatattgtccgaacttgcaaagatttgaggttttccacaataaca
actctggcttccatcccaaacacatcatccaaggtttggacattcagggatggcatccgg
agcgcagacatgaaaatgttgtaatggacttcctcgaatgcccatacatcatgaaagctc
gagacgagatcgacgttagaagaagaaaagacggaatgcttgccacaattgtgaacaagc
caaaatcatttatgtttgttgtctggcacgaacgtttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCGTTGACTTTCAATTCCGCAT 141 709 551 Antisense
GATCCTACTGAGATCTTCACTCGAA 609 415 586 Antisense
CACTCGAAACCGTGTGTGCTTCATC 93 199 603 Antisense
GACTGAATTTCACTCGACTCGTGCT 504 375 662 Antisense
TGAACGCGTTCATCAGGAGCTGGGT 102 575 716 Antisense
GGAGCTGGGTGTCCGGATATTGTCC 51 521 731 Antisense
ACAATAACAACTCTGGCTTCCATCC 137 115 782 Antisense
TCCATCCCAAACACATCATCCAAGG 428 589 800 Antisense
TTCCTCGAATGCCCATACATCATGA 193 699 880 Antisense
GACGGAATGCTTGCCACAATTGTGA 302 377 940 Antisense
TTGTTGTCTGGCACGAACGTTTCCC 328 705 986 Antisense
Sequence Source Affymetrix Proprietary Database