[Home] | [Total List]

[183193_at]

Description C46G7.2 /REP_DB=WormBase Gene ID /WP=CE08778 /TR=O02141 /GB=AAB52876.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 26      6grp_total > 51      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6318
1 2 3 4 range
A 3655.7
(0.4)
P 		5422
(2.2)
P 		6169.4
(3)
P 		372.4
(-3)
P 		5797
B 3206.8
(-0.1)
P 		6210.6
(3)
P 		6189.5
(3)
P 		311.9
(-3)
P 		5899
C 3419
(-0.1)
P 		6629.8
(3)
P 		6097.1
(2.5)
P 		366.1
(-3)
P 		6264
avr 3427.2
(0.2) 		6087.5
(2.9) 		6152
(3) 		350.1
(-3) 		5802

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6511
1 2 3 4 5 6 range
A 4482.1
(-0.9)
P 		6148
(0.7)
P 		8361.2
(2.8)
P 		8530.8
(3)
P 		5290.2
(-0.1)
P 		2358
(-3)
P 		6173
B 4925.8
(-0.5)
P 		6454
(0.9)
P 		8736.4
(3)
P 		6893.6
(1.3)
P 		4741
(-0.7)
P 		2225.4
(-3)
P 		6511
C 4720.5
(-0.7)
P 		6113.8
(0.8)
P 		7594.6
(2.3)
P 		8239.1
(3)
P 		5556.1
(0.2)
P 		2468.2
(-3)
P 		5771
avr 4709.5
(-0.6) 		6238.6
(1) 		8230.7
(3) 		7887.8
(2.7) 		5195.8
(-0.1) 		2350.5
(-3) 		5880
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2071
1 2 3 4 range
A 1331
(1.9)
P 		1177
(1.3)
P 		1612.8
(3)
P 		54.5
(-3)
P 		1558
B 1022.6
(0.9)
P 		1533.9
(3)
P 		1434.3
(2.6)
P 		66.5
(-3)
P 		1467
C 1131.8
(0.1)
P 		1906.1
(2.4)
P 		2125
(3)
P 		61.7
(-3)
P 		2063
avr 1161.8
(1) 		1539
(2.3) 		1724
(3) 		60.9
(-3) 		1663

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1612
1 2 3 4 5 6 range
A 826.2
(-2.1)
P 		2186.5
(3)
P 		1820.9
(1.6)
P 		2163.6
(2.9)
P 		1596.3
(0.8)
P 		574.1
(-3)
P 		1612
B 1713.9
(1)
P 		2148.3
(3)
P 		2121.4
(2.9)
P 		1825.9
(1.5)
P 		1926.2
(2)
P 		829.8
(-3)
P 		1319
C 1749.7
(2)
P 		1865.5
(2.6)
P 		1933
(3)
P 		1656.9
(1.5)
P 		1797.9
(2.3)
P 		826.2
(-3)
P 		1107
avr 1429.9
(0.1) 		2066.8
(3) 		1958.4
(2.5) 		1882.1
(2.2) 		1773.5
(1.7) 		743.4
(-3) 		1323
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11019
Sequence Type Exemplar sequence
Representative Public ID C46G7.2 NCBI
Target Description C46G7.2 /REP_DB=WormBase Gene ID /WP=CE08778 /TR=O02141 /GB=AAB52876.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068503(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068503 NCBI Caenorhabditis elegans C46G7.2 (C46G7.2) mRNA, complete cds. 11/11 None
SNAP00000030352 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6015181:6019577:1 9/11 None
GENEFINDER00000030360 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6015181:6017661:1 11/11 None
C46G7.2 ENSEMBL cdna:known chromosome:CEL140:IV:6015181:6018081:1 gene:C46G7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6015186-6017667(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46G7.2
Entrez Gene 177367 Entrez gene
SwissProt O02141 EMBL-EBI
WormBase CE08778 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500904 C46G7.2 [Caenorhabditis elegans] gb|AAB52876.1| Hypothetical protein C46G7.2 [Caenorhabditis elegans] 1.0E-149
blast CAE64690 Hypothetical protein CBG09472 [Caenorhabditis briggsae] 1.0E-139
blast NP_500904 C46G7.2 [Caenorhabditis elegans] gb|AAB52876.1| Hypothetical protein C46G7.2 [Caenorhabditis elegans] 1.0E-129
blast CAE64690 Hypothetical protein CBG09472 [Caenorhabditis briggsae] 1.0E-122
blast CAB60108 29kDa protein from Anisakis simplex 3.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030352 1 264-283
Sequence
Target Sequence 
>C. ELEGANS:183193_AT
agtcaaagagacttgctcgtgccgcttcattcaccaacttgacctatatcaaggataagg
acatggattttccaattcgtaaatctgattctgtgtccacgttggctccatctctagctt
tgccacaatattgcagagaagcccaacgcattgttcacacagttcctgtatacaaaccaa
ctgttcatgattggtataacaagagttatagtgatgcccgttggagagatactcatcgtg
aaatcaataaaccatataaaccattggatacttacatttctccagcttcttctcatgttc
catactattctttccagactaaacgaatcttcttcgatgagaaagcccgtcaacttgctc
catacttgaaagaatctcaacgttatatggatagatatgtttcatctcgtctcaaggctg
atgactatgcaaaccgttttgcttacactgcttacgaatggagaaaaccccaagatcact
cgtttaaccgtgaattcatgaccactcaaggagtatttgttgcaacaccaactggaattc
ctcaccaacactacgacaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCAAAGAGACTTGCTCGTGCCGC 632 61 158 Antisense
GTAAATCTGATTCTGTGTCCACGTT 629 461 236 Antisense
TCCATCTCTAGCTTTGCCACAATAT 415 591 264 Antisense
CAACGCATTGTTCACACAGTTCCTG 570 187 301 Antisense
GGATACTTACATTTCTCCAGCTTCT 417 511 423 Antisense
ATGTTCCATACTATTCTTTCCAGAC 179 47 452 Antisense
ATGAGAAAGCCCGTCAACTTGCTCC 662 45 494 Antisense
GTTTCATCTCGTCTCAAGGCTGATG 422 449 556 Antisense
CAAACCGTTTTGCTTACACTGCTTA 588 189 587 Antisense
GCAACACCAACTGGAATTCCTCACC 582 319 679 Antisense
TTCCTCACCAACACTACGACAAATT 528 697 695 Antisense
Sequence Source Affymetrix Proprietary Database