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[183191_at]

Description F38B6.7 /REP_DB=WormBase Gene ID /WP=CE04520 /TR=Q20146 /GB=AAA81145.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 41      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 30.2
(-3)
A 		207.8
(3)
M 		208.4
(3)
P 		138.8
(0.7)
P 		178
B 10.1
(-3)
A 		153.6
(2.9)
P 		155.7
(3)
P 		10.2
(-3)
A 		146
C 4.4
(-3)
A 		212.3
(3)
M 		180.8
(2.1)
P 		105
(-0.1)
P 		208
avr 14.9
(-3) 		191.2
(3) 		181.6
(2.7) 		84.7
(-0.6) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 68.3
(-3)
A 		100.2
(-0.8)
P 		79.8
(-2.2)
A 		155.4
(3)
P 		117.4
(0.4)
A 		87.8
(-1.7)
P 		87
B 57.8
(-3)
P 		127.8
(3)
P 		85.1
(-0.7)
A 		102.3
(0.8)
A 		106.7
(1.2)
P 		80.2
(-1.1)
P 		70
C 36
(-3)
A 		179.2
(3)
M 		54
(-2.2)
A 		148.4
(1.7)
A 		119.7
(0.5)
P 		97.4
(-0.4)
P 		143
avr 54
(-3) 		135.7
(3) 		73
(-1.6) 		135.4
(3) 		114.6
(1.5) 		88.5
(-0.5) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 11
(-3)
A 		45.1
(1.7)
M 		54.5
(3)
P 		20.3
(-1.7)
P 		44
B 3.2
(-2.8)
A 		37.9
(3)
P 		36.1
(2.7)
P 		2.2
(-3)
A 		36
C 1.5
(-3)
A 		61.1
(2.8)
M 		63
(3)
P 		17.7
(-1.4)
P 		62
avr 5.2
(-3) 		48
(2.6) 		51.2
(3) 		13.4
(-1.9) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 12.6
(-3)
A 		35.6
(2.1)
P 		17.4
(-1.9)
A 		39.4
(3)
P 		35.4
(2.1)
A 		21.4
(-1)
P 		27
B 20.1
(-3)
P 		42.5
(2.8)
P 		20.7
(-2.8)
A 		27.1
(-1.2)
A 		43.3
(3)
P 		29.9
(-0.5)
P 		23
C 13.4
(-3)
A 		54.7
(3)
M 		13.8
(-2.9)
A 		29.8
(-0.6)
A 		38.7
(0.7)
P 		32.6
(-0.2)
P 		41
avr 15.4
(-3) 		44.3
(3) 		17.3
(-2.6) 		32.1
(0.5) 		39.1
(1.9) 		28
(-0.4) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17280
Sequence Type Exemplar sequence
Representative Public ID F38B6.7 NCBI
Target Description F38B6.7 /REP_DB=WormBase Gene ID /WP=CE04520 /TR=Q20146 /GB=AAA81145.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076724 NCBI Caenorhabditis elegans F38B6.7 (F38B6.7) mRNA, complete cds. 11/11 None
SNAP00000034006 ENSEMBL cdna:SNAP chromosome:CEL140:X:6695724:6698290:-1 9/11 None
GENEFINDER00000034009 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6696277:6698290:-1 11/11 None
F38B6.7 ENSEMBL cdna:known chromosome:CEL140:X:6695773:6698290:-1 gene:F38B6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6695783-6698290(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38B6.7
Entrez Gene 185455 Entrez gene
SwissProt Q20146 EMBL-EBI
WormBase CE35526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81145 Hypothetical protein F38B6.7 [Caenorhabditis elegans] ref|NP_509125.2| F38B6.7 [Caenorhabditis elegans] 0.0
blast CAE65774 Hypothetical protein CBG10869 [Caenorhabditis briggsae] 1.0E-166
blast CAE65774 Hypothetical protein CBG10869 [Caenorhabditis briggsae] 1.0E-145
blast AAA81145 Hypothetical protein F38B6.7 [Caenorhabditis elegans] ref|NP_509125.2| F38B6.7 [Caenorhabditis elegans] 1.0E-131
blast CAE65774 Hypothetical protein CBG10869 [Caenorhabditis briggsae] 1.0E-122
blast CAE65775 Hypothetical protein CBG10870 [Caenorhabditis briggsae] 7.0E-62
Sequence
Target Sequence 
>C. ELEGANS:183191_AT
aacccaccaggaatccctgagcaagtgaaaccaatatgtccatatggtgcatcatcatac
gatttgccttccgtccttttatgtgatccgactgaagacaacgcttgcccggagcacttc
acctgtgagcaagcagtgaaccaccaaatgctaacgacctataatatgcatttgtgctgt
aaaacaagcacgctagactcgtttgaaaacgtgttttacgaaacaaaagttggaatcaac
aaaatgtcgtcaaacttgtctatgccgattttttacgtcacacaattatcaccatcaatt
gttccaaatgcaccaaaagggggaatagactatgttgttttgaatgaatatatccctact
aagaacaaggcaaacactcctgaaattagaactggcgatcattttgcaatgctaccatac
agattccgtgagcctgtgtacttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCCACCAGGAATCCCTGAGCAAG 185 147 337 Antisense
ATCATCATACGATTTGCCTTCCGTC 710 29 387 Antisense
CTTCCGTCCTTTTATGTGATCCGAC 642 217 404 Antisense
GATCCGACTGAAGACAACGCTTGCC 88 417 421 Antisense
GAGCACTTCACCTGTGAGCAAGCAG 113 391 448 Antisense
GAACCACCAAATGCTAACGACCTAT 383 335 474 Antisense
AATGTCGTCAAACTTGTCTATGCCG 387 163 579 Antisense
CTATGCCGATTTTTTACGTCACACA 638 223 596 Antisense
TACGTCACACAATTATCACCATCAA 211 649 610 Antisense
GCAATGCTACCATACAGATTCCGTG 31 323 742 Antisense
GATTCCGTGAGCCTGTGTACTTGAA 145 433 758 Antisense
Sequence Source Affymetrix Proprietary Database