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[183189_s_at]

Description C44C10.9 /REP_DB=WormBase Gene ID /WP=CE18553 /TR=Q18614 /GB=CAA93643.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 30      6grp_total > 05      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1930
1 2 3 4 range
A 1898.7
(3)
P 		954.1
(-0.6)
P 		878.9
(-0.9)
P 		326.3
(-3)
P 		1572
B 2189
(3)
P 		929.7
(-1.1)
P 		665.5
(-1.9)
P 		333.9
(-3)
P 		1855
C 1830.2
(3)
P 		964.8
(-0.3)
P 		888.7
(-0.6)
P 		259.3
(-3)
P 		1571
avr 1972.6
(3) 		949.5
(-0.7) 		811
(-1.2) 		306.5
(-3) 		1666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1445
1 2 3 4 5 6 range
A 1692.9
(3)
P 		1394.4
(1.7)
P 		661.4
(-1.6)
P 		622.9
(-1.8)
P 		634.3
(-1.8)
P 		357.1
(-3)
P 		1336
B 1647.5
(3)
P 		1124.6
(0.7)
P 		781.3
(-0.8)
P 		536.7
(-1.9)
P 		516.2
(-2)
P 		285.6
(-3)
P 		1362
C 1730.6
(3)
P 		1141.9
(0.5)
P 		1004.2
(-0)
P 		484.4
(-2.2)
P 		487.4
(-2.2)
P 		297.3
(-3)
P 		1433
avr 1690.3
(3) 		1220.3
(1) 		815.6
(-0.8) 		548
(-2) 		546
(-2) 		313.3
(-3) 		1377
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 654
1 2 3 4 range
A 691.3
(3)
P 		207.1
(-1.5)
P 		229.7
(-1.3)
P 		47.8
(-3)
P 		644
B 698.1
(3)
P 		229.6
(-1.5)
P 		154.2
(-2.2)
P 		71.1
(-3)
P 		627
C 605.9
(3)
P 		277.4
(-0.5)
P 		309.7
(-0.2)
P 		43.7
(-3)
P 		562
avr 665.1
(3) 		238
(-1.2) 		231.2
(-1.3) 		54.2
(-3) 		611

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 555
1 2 3 4 5 6 range
A 312.1
(0.3)
P 		495.9
(3)
P 		144
(-2.2)
P 		158
(-2)
P 		191.4
(-1.5)
P 		86.9
(-3)
P 		409
B 573.3
(3)
P 		374.3
(0.4)
P 		189.7
(-1.9)
P 		142.2
(-2.5)
P 		209.7
(-1.7)
P 		106.5
(-3)
P 		467
C 641.4
(3)
P 		348.4
(-0.2)
P 		255.6
(-1.3)
P 		97.4
(-3)
P 		157.7
(-2.3)
P 		99.5
(-3)
P 		544
avr 508.9
(3) 		406.2
(1.5) 		196.4
(-1.6) 		132.5
(-2.5) 		186.3
(-1.7) 		97.6
(-3) 		411
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183189_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17271
Sequence Type Exemplar sequence
Representative Public ID C44C10.9 NCBI
Target Description C44C10.9 /REP_DB=WormBase Gene ID /WP=CE18553 /TR=Q18614 /GB=CAA93643.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077560 NCBI Caenorhabditis elegans C44C10.9 (C44C10.9) mRNA, complete cds. 11/11 None
C44C10.9 ENSEMBL cdna:known chromosome:CEL140:X:11713162:11716430:-1 gene:C44C10.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037980 2/11 Cross Hyb Matching Probes None
SNAP00000037974 2/11 Cross Hyb Matching Probes None
SNAP00000037975 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037984 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11713315-11716430(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44C10.9
Entrez Gene 3565088 Entrez gene
SwissProt Q18614 EMBL-EBI
WormBase CE18553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93643 Hypothetical protein C44C10.9 [Caenorhabditis elegans] ref|NP_509961.1| C44C10.9 [Caenorhabditis elegans] 1.0E-105
blast CAE57327 Hypothetical protein CBG00253 [Caenorhabditis briggsae] 1.0E-97
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509961.1 1 66-88
C44C10.9 1 66-88
Sequence
Target Sequence 
>C. ELEGANS:183189_S_AT
gaatgttgtggacgtacctgctgcattccacaagccactactatcccattctggttgatg
ttgattcttattgcattggccattttcttgatagcacttctactcgcctgtctagcgtac
tatttggcaaaatatttgaaatcccgtccaaagaaagaaaaattcatcccgtctccaatg
caagagacgacgttgatgatgccaaaaccagtgcagatcacgcagagaaacgaggatgaa
atcagccgagcatcggttgctcagcacgtcgagcccgctccattgtcccctcaaagagca
cacaacgccttttacagaccgtttgttgccgacgatgttgatgacagagacatgcctgct
ccacttcgcggctctatctcgtatcattccgtgaatgagctcacaaacagccagttcgga
acaattaaaacaattgagaaacccaaggatcgcagctcagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTTGTGGACGTACCTGCTGCA 36 331 151 Antisense
CCACTACTATCCCATTCTGGTTGAT 120 275 185 Antisense
TTTCTTGATAGCACTTCTACTCGCC 489 671 234 Antisense
TCTACTCGCCTGTCTAGCGTACTAT 184 615 249 Antisense
ATCAGCCGAGCATCGGTTGCTCAGC 287 29 391 Antisense
CCATTGTCCCCTCAAAGAGCACACA 407 269 430 Antisense
GAGCACACAACGCCTTTTACAGACC 635 389 446 Antisense
AGACCGTTTGTTGCCGACGATGTTG 443 69 466 Antisense
GATGACAGAGACATGCCTGCTCCAC 19 413 490 Antisense
GCTCTATCTCGTATCATTCCGTGAA 424 299 521 Antisense
AAACCCAAGGATCGCAGCTCAGAGC 3 127 589 Antisense
Sequence Source Affymetrix Proprietary Database