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[183188_at]

Description K09E2.1 /REP_DB=WormBase Gene ID /WP=CE02814 /TR=Q21394 /GB=AAC46572.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 04      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 33
(-3)
A 		76.1
(2.5)
A 		80.4
(3)
A 		64.3
(1)
A 		47
B 92.9
(3)
M 		49.6
(-2.5)
A 		45.5
(-3)
A 		86.2
(2.2)
A 		47
C 54.4
(-0.5)
A 		16.7
(-3)
A 		34
(-1.9)
A 		108.6
(3)
M 		92
avr 60.1
(-1.1) 		47.5
(-3) 		53.3
(-2.1) 		86.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 517
1 2 3 4 5 6 range
A 82
(-2.6)
A 		55
(-2.9)
A 		49.3
(-3)
P 		553.9
(3)
P 		338.6
(0.4)
P 		61.6
(-2.9)
A 		505
B 55.7
(-2.7)
A 		52.2
(-2.8)
A 		65
(-2.6)
A 		450.7
(3)
P 		364.8
(1.8)
P 		37
(-3)
A 		414
C 52.5
(-3)
A 		52.7
(-3)
A 		134.4
(-1.8)
M 		457.4
(3)
P 		454.4
(3)
P 		75.5
(-2.7)
A 		405
avr 63.4
(-2.9) 		53.3
(-3) 		82.9
(-2.6) 		487.3
(3) 		385.9
(1.6) 		58
(-2.9) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 12
(-1.7)
A 		16.5
(0.7)
A 		21
(3)
A 		9.4
(-3)
A 		12
B 29.6
(3)
M 		12.2
(-2.5)
A 		10.6
(-3)
A 		18.4
(-0.5)
A 		19
C 18
(2.9)
A 		4.8
(-3)
A 		11.8
(0.1)
A 		18.3
(3)
M 		14
avr 19.9
(3) 		11.2
(-3) 		14.5
(-0.7) 		15.4
(-0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 15.1
(-2.8)
A 		19.6
(-2.6)
A 		10.7
(-3)
P 		140.5
(3)
P 		102.2
(1.2)
P 		15
(-2.8)
A 		130
B 19.4
(-2.8)
A 		17.4
(-2.8)
A 		15.8
(-2.9)
A 		119.4
(1.7)
P 		148.2
(3)
P 		13.8
(-3)
A 		134
C 19.5
(-2.8)
A 		16.1
(-3)
A 		34.2
(-2.2)
M 		92
(0.5)
P 		147
(3)
P 		25.3
(-2.6)
A 		131
avr 18
(-3) 		17.7
(-3) 		20.2
(-2.9) 		117.3
(2.2) 		132.5
(3) 		18
(-3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17270
Sequence Type Exemplar sequence
Representative Public ID K09E2.1 NCBI
Target Description K09E2.1 /REP_DB=WormBase Gene ID /WP=CE02814 /TR=Q21394 /GB=AAC46572.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077068 NCBI Caenorhabditis elegans K09E2.1 (K09E2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000011515 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8681848:8685423:1 11/11 None
SNAP00000011512 ENSEMBL cdna:SNAP chromosome:CEL140:X:8682437:8686084:1 11/11 None
K09E2.1 ENSEMBL cdna:known chromosome:CEL140:X:8682338:8685455:1 gene:K09E2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8682336-8685454(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E2.1
Entrez Gene 187215 Entrez gene
SwissProt Q21394 EMBL-EBI
WormBase CE02814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46572 Hypothetical protein K09E2.1 [Caenorhabditis elegans] ref|NP_509469.1| K09E2.1 [Caenorhabditis elegans] 0.0
blast CAE69342 Hypothetical protein CBG15420 [Caenorhabditis briggsae] 0.0
blast AAC46572 Hypothetical protein K09E2.1 [Caenorhabditis elegans] ref|NP_509469.1| K09E2.1 [Caenorhabditis elegans] 1.0E-177
blast AAC46572 Hypothetical protein K09E2.1 [Caenorhabditis elegans] ref|NP_509469.1| K09E2.1 [Caenorhabditis elegans] 1.0E-160
blast CAE69342 Hypothetical protein CBG15420 [Caenorhabditis briggsae] 4.0E-89
blast XP_356184 PREDICTED: hypothetical protein LOC68553 [Mus musculus] 6.0E-17
blast CAB17068 Hypothetical protein H13N06.2 [Caenorhabditis elegans] ref|NP_510558.2| H13N06.2 [Caenorhabditis elegans] 4.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.0E-21
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 8.5E-14
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.4E-39
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 8.5E-14
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 5.0E-16
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 8.8E-30
Sequence
Target Sequence 
>C. ELEGANS:183188_AT
gcacaacgacttcagtgaccgtaccaagcacacaaaaggcgacaccatcaccaagcagaa
ctaccaaaaaaagtacaaccacaaccagcactactgcaacaccacgtcaggctactccaa
ctcgaaacccgttgccacttcttcaaaccatgtctgcaataactgcgttccctacactat
tgagcatggagaaagcggtgacactccccatcaacaacgcactcggcaagtaagacgtgt
gccaacaccaaccactcctccaatcagaagtacattgagaccaattattattgaggagaa
agaagaggaaactctcagttctgcagttcaatgcccaatggacattctttttgtggttga
cagctctggatccattactcatacatatgacacacaaaaggattatctaacccaattaat
aaagaaagtagagccaagtcggagccatcgcgttggtctcattcaattcgccggtcctca
catccaaaagatggaatggtcatttgacacacattcaaagaactcgcagcttttgtctgc
aatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAACGACTTCAGTGACCGTACC 407 285 1377 Antisense
CCACTTCTTCAAACCATGTCTGCAA 268 275 1511 Antisense
ATGTCTGCAATAACTGCGTTCCCTA 223 49 1526 Antisense
CTGCGTTCCCTACACTATTGAGCAT 583 235 1539 Antisense
CCATCAACAACGCACTCGGCAAGTA 175 271 1584 Antisense
TAAGACGTGTGCCAACACCAACCAC 614 637 1607 Antisense
AACCACTCCTCCAATCAGAAGTACA 631 147 1626 Antisense
GGAAACTCTCAGTTCTGCAGTTCAA 3 529 1683 Antisense
GACAGCTCTGGATCCATTACTCATA 227 369 1735 Antisense
AAGTAGAGCCAAGTCGGAGCCATCG 437 155 1802 Antisense
GAACTCGCAGCTTTTGTCTGCAATT 9 349 1896 Antisense
Sequence Source Affymetrix Proprietary Database