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[183187_at]

Description K10D11.1 /REP_DB=WormBase Gene ID /WP=CE16238 /TR=O45667 /GB=CAB03521.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 34      4grp_high_8_8 > 49      6grp_total > 02      4grp_total > 62      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 996
1 2 3 4 range
A 1063.7
(3)
P 		438
(-0.9)
P 		644.3
(0.4)
P 		107.7
(-3)
P 		956
B 983.3
(3)
P 		513.8
(-0.1)
P 		666.3
(0.9)
P 		67.6
(-3)
P 		916
C 1024.7
(3)
P 		524.4
(-0.4)
P 		653.9
(0.5)
P 		136.9
(-3)
P 		888
avr 1023.9
(3) 		492.1
(-0.5) 		654.8
(0.6) 		104.1
(-3) 		920

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 109.4
(3)
P 		99.4
(2.2)
P 		35.1
(-3)
A 		88.7
(1.3)
P 		102.1
(2.4)
A 		58.2
(-1.1)
A 		74
B 92.1
(0)
P 		156.1
(3)
M 		26.1
(-3)
A 		95.3
(0.2)
A 		67.6
(-1.1)
A 		43
(-2.2)
A 		130
C 119.5
(2.1)
P 		138.3
(3)
P 		8.6
(-3)
A 		97.4
(1.1)
A 		60.6
(-0.6)
A 		31.5
(-1.9)
A 		130
avr 107
(1.7) 		131.3
(3) 		23.3
(-3) 		93.8
(0.9) 		76.8
(-0) 		44.2
(-1.8) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 387.3
(3)
P 		95.1
(-1.7)
P 		168.4
(-0.5)
P 		15.8
(-3)
P 		372
B 313.6
(3)
P 		126.9
(-0.7)
P 		154.4
(-0.2)
P 		14.4
(-3)
P 		299
C 339.2
(3)
P 		150.8
(-0.6)
P 		227.9
(0.9)
P 		23.1
(-3)
P 		316
avr 346.7
(3) 		124.3
(-1.1) 		183.6
(0) 		17.8
(-3) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 20.2
(-0.3)
P 		35.4
(3)
P 		7.6
(-3)
A 		22.5
(0.2)
P 		30.8
(2)
A 		14.2
(-1.6)
A 		28
B 32
(0.4)
P 		51.9
(3)
M 		6.3
(-3)
A 		25.3
(-0.5)
A 		27.5
(-0.2)
A 		16
(-1.7)
A 		46
C 44.3
(3)
P 		42.2
(2.7)
P 		2.2
(-3)
A 		19.6
(-0.5)
A 		19.6
(-0.5)
A 		10.5
(-1.8)
A 		42
avr 32.2
(1.3) 		43.2
(3) 		5.4
(-3) 		22.5
(-0.3) 		26
(0.3) 		13.6
(-1.7) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9371
Sequence Type Exemplar sequence
Representative Public ID K10D11.1 NCBI
Target Description K10D11.1 /REP_DB=WormBase Gene ID /WP=CE16238 /TR=O45667 /GB=CAB03521.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070085(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070085 NCBI Caenorhabditis elegans Downstream Of DAF-16 (regulated by DAF-16) family member (dod-17) (dod-17) mRNA, complete cds. 11/11 None
SNAP00000011394 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12976278:12978204:1 11/11 None
GENEFINDER00000011405 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12974604:12982000:1 11/11 None
K10D11.1 ENSEMBL cdna:known chromosome:CEL140:IV:12976278:12978204:1 gene:K10D11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12976283-12978203(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dod-17
Ensembl K10D11.1
Entrez Gene 187266 Entrez gene
SwissProt O45667 EMBL-EBI
WormBase CE35589 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03521 Hypothetical protein K10D11.1 [Caenorhabditis elegans] ref|NP_502486.2| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-17) [Caenorhabditis elegans] 0.0
blast CAB03526 Hypothetical protein K10D11.2 [Caenorhabditis elegans] ref|NP_502487.1| K10D11.2 [Caenorhabditis elegans] 1.0E-164
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 1.0E-131
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 1.0E-130
blast CAB05218 Hypothetical protein F55G11.2 [Caenorhabditis elegans] ref|NP_502483.1| F55G11.2 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.1E-49
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.1E-49
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.1E-47
Sequence
Target Sequence 
>C. ELEGANS:183187_AT
ggccacttccaacagtagatttcgaatacagcacaggaccgactggatggattataaatg
ctacaaatgcagtatatgctcatgaatacagtgaaggtggtggcatcactttgatggttt
tccctgagaacgaaacgagctattcttcgttgagaagcgcgttggtgtatgagggaagaa
gcttgagttcagcgaattatgtttcaaatctcaaccttctctgccagacgaaaaaacaat
gggcttctacccaaaacgctatttttgtagtgaaccttgaagctagtctctccaaggata
ttcttctagttcaagctaacagatatttgactggaatcgatgagatggtggaactccggc
cgcaattgaactcgatctataatggaacggtacacggtgggacacagatgtcttctcttg
tttcagtagctaatatcaatatgcaaatgattgatgctcagatgataaatgagtctaact
taacagtttaccgtggttctccagccgcatacacctttaaacaaaattatacgtatggga
gcacagctgaaaagcgcactgcctttgtctttcagtggtactttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCACTTCCAACAGTAGATTTCGA 64 529 407 Antisense
CATCACTTTGATGGTTTTCCCTGAG 424 213 510 Antisense
GAGAAGCGCGTTGGTGTATGAGGGA 532 391 558 Antisense
CTCAACCTTCTCTGCCAGACGAAAA 82 229 616 Antisense
AATGGGCTTCTACCCAAAACGCTAT 561 159 644 Antisense
GTGAACCTTGAAGCTAGTCTCTCCA 285 481 676 Antisense
TCCGGCCGCAATTGAACTCGATCTA 356 593 761 Antisense
GATGTCTTCTCTTGTTTCAGTAGCT 452 409 813 Antisense
TAACAGTTTACCGTGGTTCTCCAGC 409 639 887 Antisense
GCTGAAAAGCGCACTGCCTTTGTCT 709 295 952 Antisense
GCCTTTGTCTTTCAGTGGTACTTTT 33 281 967 Antisense
Sequence Source Affymetrix Proprietary Database