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[183186_at]

Description T07H8.4 /REP_DB=WormBase Gene ID /WP=CE18225 /TR=O61893 /GB=AAC17681.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 55      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 48.9
(3)
A 		37.6
(0.7)
A 		34.9
(0.1)
A 		19.7
(-3)
A 		29
B 46
(3)
A 		13.1
(-1.6)
A 		16.7
(-1.1)
A 		3
(-3)
A 		43
C 81
(3)
A 		18.1
(-3)
A 		37.8
(-1.1)
A 		48.2
(-0.1)
A 		63
avr 58.6
(3) 		22.9
(-3) 		29.8
(-1.8) 		23.6
(-2.9) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 83.2
(3)
A 		58
(1.1)
A 		73.1
(2.2)
A 		27
(-1.3)
A 		4.3
(-3)
A 		18.4
(-1.9)
A 		79
B 58.8
(2.5)
A 		64.2
(3)
A 		9.7
(-2.3)
A 		4.9
(-2.7)
A 		23.4
(-1)
A 		2.3
(-3)
A 		62
C 94.1
(1.7)
P 		117.7
(3)
A 		46.4
(-0.9)
A 		9.4
(-2.9)
A 		20.9
(-2.3)
A 		7.6
(-3)
A 		110
avr 78.7
(2.9) 		80
(3) 		43.1
(-0.1) 		13.8
(-2.6) 		16.2
(-2.4) 		9.4
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 17.8
(3)
A 		8.2
(-0.9)
A 		9.1
(-0.5)
A 		2.9
(-3)
A 		15
B 14.7
(3)
A 		3.2
(-1.9)
A 		3.9
(-1.6)
A 		0.6
(-3)
A 		14
C 26.8
(3)
A 		5.2
(-3)
A 		13.2
(-0.8)
A 		8.1
(-2.2)
A 		22
avr 19.8
(3) 		5.5
(-2.4) 		8.7
(-1.2) 		3.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 15.3
(1.4)
A 		20.6
(3)
A 		15.9
(1.5)
A 		6.9
(-1.3)
A 		1.3
(-3)
A 		4.5
(-2)
A 		19
B 20.5
(2.7)
A 		21.4
(3)
A 		2.4
(-2.6)
A 		1.3
(-2.9)
A 		9.5
(-0.5)
A 		0.9
(-3)
A 		21
C 34.9
(2.8)
P 		35.9
(3)
A 		11.8
(-1.3)
A 		1.9
(-3)
A 		6.8
(-2.1)
A 		2.6
(-2.9)
A 		34
avr 23.6
(2.4) 		26
(3) 		10
(-1.1) 		3.4
(-2.8) 		5.9
(-2.2) 		2.7
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12183
Sequence Type Exemplar sequence
Representative Public ID T07H8.4 NCBI
Target Description T07H8.4 /REP_DB=WormBase Gene ID /WP=CE18225 /TR=O61893 /GB=AAC17681.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028950(11), NM_001028946(11), NM_171477(11), NM_001028948(11), NM_001028947(11), NM_001028949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028950 NCBI Caenorhabditis elegans MEChanosensory abnormality family member (mec-1) (mec-1) mRNA, complete cds. 11/11 None
NM_001028946 NCBI Caenorhabditis elegans MEChanosensory abnormality family member (mec-1) (mec-1) mRNA, complete cds. 11/11 None
NM_171477 NCBI Caenorhabditis elegans MEChanosensory abnormality family member (mec-1) (mec-1) mRNA, complete cds. 11/11 None
NM_001028948 NCBI Caenorhabditis elegans MEChanosensory abnormality family member (mec-1) (mec-1) mRNA, complete cds. 11/11 None
NM_001028947 NCBI Caenorhabditis elegans MEChanosensory abnormality family member (mec-1) (mec-1) mRNA, complete cds. 11/11 None
NM_001028949 NCBI Caenorhabditis elegans MEChanosensory abnormality family member (mec-1) (mec-1) mRNA, complete cds. 11/11 None
SNAP00000037161 ENSEMBL cdna:SNAP chromosome:CEL140:V:6967253:6972156:1 10/11 None
GENEFINDER00000037165 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6959231:6968945:1 11/11 None
T07H8.4d.2 ENSEMBL cdna:known chromosome:CEL140:V:6959176:6968945:1 gene:T07H8.4 11/11 None
T07H8.4h ENSEMBL cdna:known chromosome:CEL140:V:6959176:6969020:1 gene:T07H8.4 11/11 None
T07H8.4d.1 ENSEMBL cdna:known chromosome:CEL140:V:6959230:6968945:1 gene:T07H8.4 11/11 None
T07H8.4a ENSEMBL cdna:known chromosome:CEL140:V:6959231:6968945:1 gene:T07H8.4 11/11 None
T07H8.4f.1 ENSEMBL cdna:known chromosome:CEL140:V:6959329:6968945:1 gene:T07H8.4 11/11 None
T07H8.4f.2 ENSEMBL cdna:known chromosome:CEL140:V:6959329:6968945:1 gene:T07H8.4 11/11 None
T07H8.4e ENSEMBL cdna:known chromosome:CEL140:V:6959671:6968945:1 gene:T07H8.4 11/11 None
T07H8.4g ENSEMBL cdna:known chromosome:CEL140:V:6961391:6968945:1 gene:T07H8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
AY532258 2/11 Cross Hyb Matching Probes None
AY532262 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
188259 8 6 NM_001028946 183186_at (11)
NM_001028947 183186_at (11)
NM_001028948 183186_at (11)
NM_001028949 183186_at (11)
NM_001028950 183186_at (11)
NM_171477 183186_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6959231-6968946(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07H8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024121 MEChanosensory abnormality family member (mec-1) [Caenorhabditis elegans] gb|AAV28331.1| Mechanosensory abnormality protein 1, isoform h [Caenorhabditis elegans] 0.0
blast NP_741559 MEChanosensory abnormality family member (mec-1) [Caenorhabditis elegans] gb|AAV28324.1| Mechanosensory abnormality protein 1, isoform a [Caenorhabditis elegans] 0.0
blast NP_001024117 MEChanosensory abnormality family member (mec-1) [Caenorhabditis elegans] gb|AAV28327.1| Mechanosensory abnormality protein 1, isoform d [Caenorhabditis elegans] 0.0
blast NP_001024119 MEChanosensory abnormality family member (mec-1) [Caenorhabditis elegans] gb|AAV28329.1| Mechanosensory abnormality protein 1, isoform f [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 5.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.4E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.5E-6
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-8
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-11
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-18
Pfam IPR006209 EMBL-EBI EGF-like domain 5.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.5E-6
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-8
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-11
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-8
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-11
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.5E-6
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-8
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-11
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-18
Pfam IPR006209 EMBL-EBI EGF-like domain 5.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.5E-7
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.5E-6
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-8
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-11
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.5E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.2E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-8
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-5
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.7E-11
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.9E-27
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 5.9E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-11
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.1E-16
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 7.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.0E-18
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 6.0E-5
Sequence
Target Sequence 
>C. ELEGANS:183186_AT
tcaatttctttacggtggctgtggaggaaatccaaatcgcttcgacacttttgaaatttg
tcaaaaagcgtgtgaagtcactggaacagatccgtgtatggaatctttggatcgtggaag
ttggtgtgaggcaatgtcaaatagatattattttaacaagagagcacgccaatgcaaagg
atttcactacaccgggtgtggaaaaagtggaaataattttttgacaaaagaagagtgtca
gacaaaatgtgagaaacgttttccgcgtgcagcgccgtcaaaaaagaaggcgaagcttaa
agcaaaaattattatatttgagcaaaattccaggtacaatgtaactggacgagacactat
tctgaatgttcattattgtgcaattcgtggctctgcagactgcatcagtgaaagttatag
gtctacggagggggaggagtactgtaatatcttgagaccatttctacgaggccaaaactt
atactctttctattttggattagattcagtgaatccaatgtaccgcccaaaggatgggct
ctccggaagaattcaacggaaaaacgaaacgattgctgccgttcttgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTTCTTTACGGTGGCTGTGGA 111 633 5289 Antisense
GAAATCCAAATCGCTTCGACACTTT 60 363 5315 Antisense
GAAGTCACTGGAACAGATCCGTGTA 373 335 5362 Antisense
AAGGATTTCACTACACCGGGTGTGG 17 161 5465 Antisense
TGTGAGAAACGTTTTCCGCGTGCAG 707 555 5536 Antisense
CGCGTGCAGCGCCGTCAAAAAAGAA 570 255 5552 Antisense
TGCAATTCGTGGCTCTGCAGACTGC 211 577 5667 Antisense
CTTGAGACCATTTCTACGAGGCCAA 410 33 5739 Antisense
TTCAGTGAATCCAATGTACCGCCCA 500 685 5793 Antisense
CCCAAAGGATGGGCTCTCCGGAAGA 710 247 5814 Antisense
GAAACGATTGCTGCCGTTCTTGTAT 118 359 5854 Antisense
Sequence Source Affymetrix Proprietary Database