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[183185_at]

Description F15H10.8 /REP_DB=WormBase Gene ID /WP=CE26699 /TR=Q9TVR2 /GB=CAB60279.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 38      6grp_total > 81      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 5.3
(-3)
A 		31.8
(0.2)
A 		44.4
(1.7)
P 		55.3
(3)
M 		50
B 29
(-3)
P 		69.7
(2.8)
P 		71.3
(3)
P 		38.8
(-1.6)
P 		42
C 31.6
(-3)
M 		64.2
(2.4)
P 		43.5
(-1)
A 		68.1
(3)
P 		37
avr 22
(-3) 		55.2
(3) 		53.1
(2.6) 		54.1
(2.8) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 7
(-3)
A 		36.5
(1.5)
A 		38
(1.8)
A 		46.1
(3)
A 		27.4
(0.1)
A 		21.1
(-0.8)
A 		39
B 15.1
(-3)
A 		31.3
(-1.2)
P 		23
(-2.1)
A 		68.5
(3)
P 		62.3
(2.3)
P 		32.9
(-1)
P 		53
C 16.5
(-3)
A 		37.1
(-0.8)
A 		33.5
(-1.2)
A 		72.5
(3)
P 		45.1
(0.1)
M 		25.8
(-2)
A 		56
avr 12.9
(-3) 		35
(-0.3) 		31.5
(-0.7) 		62.4
(3) 		44.9
(0.9) 		26.6
(-1.3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.9
(-3)
A 		6.9
(0.1)
A 		11.6
(3)
P 		8.1
(0.8)
M 		10
B 9.2
(-2.4)
P 		17.2
(3)
P 		16.5
(2.5)
P 		8.3
(-3)
P 		9
C 10.5
(-3)
M 		18.5
(3)
P 		15.1
(0.5)
A 		11.5
(-2.3)
P 		8
avr 7.2
(-3) 		14.2
(2.8) 		14.4
(3) 		9.3
(-1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.3
(-3)
A 		13
(3)
A 		8.3
(0.6)
A 		11.7
(2.3)
A 		8.3
(0.6)
A 		5.1
(-1.1)
A 		12
B 5.3
(-3)
A 		10.4
(-1.5)
P 		5.6
(-2.9)
A 		18.1
(0.8)
P 		25.3
(3)
P 		12.3
(-0.9)
P 		20
C 6.1
(-3)
A 		11.3
(0.7)
A 		8.5
(-1.3)
A 		14.6
(3)
P 		14.6
(3)
M 		8.7
(-1.2)
A 		9
avr 4.2
(-3) 		11.6
(0.7) 		7.5
(-1.3) 		14.8
(2.3) 		16.1
(3) 		8.7
(-0.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12080
Sequence Type Exemplar sequence
Representative Public ID F15H10.8 NCBI
Target Description F15H10.8 /REP_DB=WormBase Gene ID /WP=CE26699 /TR=Q9TVR2 /GB=CAB60279.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073272
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F15H10.8 ENSEMBL cdna:known chromosome:CEL140:V:10404039:10405409:-1 gene:F15H10.8 None
GENEFINDER00000002826 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10404558:10405382:-1 None
NM_073272 NCBI Caenorhabditis elegans F15H10.8 (F15H10.8) mRNA, complete cds. None
SNAP00000028841 ENSEMBL cdna:SNAP chromosome:CEL140:V:10402054:10404453:-1 None
SNAP00000002810 ENSEMBL cdna:SNAP chromosome:CEL140:V:10404493:10405129:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10403826-10405129(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15H10.8
Entrez Gene 179451 Entrez gene
SwissProt Q9TVR2 EMBL-EBI
WormBase CE26699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60279 Hypothetical protein F15H10.8 [Caenorhabditis elegans] emb|CAB60280.2| Hypothetical protein F15H10.8 [Caenorhabditis elegans] ref|NP_505673.1| F15H10.8 [Caenorhabditis elegans] 0.0
blast CAE64823 Hypothetical protein CBG09619 [Caenorhabditis briggsae] 1.0E-141
blast CAB60279 Hypothetical protein F15H10.8 [Caenorhabditis elegans] emb|CAB60280.2| Hypothetical protein F15H10.8 [Caenorhabditis elegans] ref|NP_505673.1| F15H10.8 [Caenorhabditis elegans] 1.0E-105
blast CAB60279 Hypothetical protein F15H10.8 [Caenorhabditis elegans] emb|CAB60280.2| Hypothetical protein F15H10.8 [Caenorhabditis elegans] ref|NP_505673.1| F15H10.8 [Caenorhabditis elegans] 3.0E-93
blast CAE64823 Hypothetical protein CBG09619 [Caenorhabditis briggsae] 3.0E-71
blast CAE64823 Hypothetical protein CBG09619 [Caenorhabditis briggsae] 7.0E-71
blast CAB60279 Hypothetical protein F15H10.8 [Caenorhabditis elegans] emb|CAB60280.2| Hypothetical protein F15H10.8 [Caenorhabditis elegans] ref|NP_505673.1| F15H10.8 [Caenorhabditis elegans] 5.0E-54
blast CAE64823 Hypothetical protein CBG09619 [Caenorhabditis briggsae] 6.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.1E-5
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.2E-4
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.2E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505673.1 1 26-45
F15H10.8 1 26-45
GENEFINDER00000002826 1 26-45
Sequence
Target Sequence 
>C. ELEGANS:183185_AT
atttgggactgatccattccgtggaaaaaacagtgcttatgggaaattttaccaagttgc
tttatcgaccgatgataacaagttgcagctggcaaatgtttatgacaaattttctgataa
aaactatgtggcaacaatgaatcagtacacattcttcaatcaaactgttggggaaaagaa
aattgatatgctctggattaccccaaattctggaaacttcgaatatgaaaaatatctgaa
taaagatggagagtttgcaaaaatgggaatcgttgtgtgccaagttaatattgaaataac
caaaaatgacgctgatcgatggttcaaattaataaatccattggttgatgaaaagagatt
tatttttatgagaccaattgcaacggaaggaggagaattaataagaacttatcttttaaa
tgtttctgatccaatgtttgattctgatagcggatcacaatggcttaagatgattcaaaa
tttggagaaaaattcaaagtttatattcatgcgtccgacaacaacaaccactggtggagc
tagagcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGGGACTGATCCATTCCGTGGA 46 15 405 Antisense
ACCAAGTTGCTTTATCGACCGATGA 348 83 455 Antisense
GACCGATGATAACAAGTTGCAGCTG 245 383 471 Antisense
TGCAGCTGGCAAATGTTTATGACAA 81 579 488 Antisense
AATCAGTACACATTCTTCAATCAAA 291 171 544 Antisense
TTTCTGATCCAATGTTTGATTCTGA 382 669 827 Antisense
GTTTGATTCTGATAGCGGATCACAA 544 451 840 Antisense
AGCGGATCACAATGGCTTAAGATGA 653 81 853 Antisense
CAAAGTTTATATTCATGCGTCCGAC 401 193 899 Antisense
TATTCATGCGTCCGACAACAACAAC 578 663 908 Antisense
AACCACTGGTGGAGCTAGAGCATTT 70 149 930 Antisense
Sequence Source Affymetrix Proprietary Database