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[183184_at]

Description C08A9.6 /REP_DB=WormBase Gene ID /WP=CE06788 /TR=Q17809 /GB=AAB53814.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 75.3
(0.4)
A 		30.2
(-3)
A 		75.6
(0.5)
A 		109.1
(3)
P 		79
B 78
(3)
M 		56.6
(-0.3)
A 		57.1
(-0.2)
A 		38.8
(-3)
P 		39
C 94.1
(3)
A 		47.2
(-3)
A 		62.5
(-1)
A 		81.2
(1.3)
P 		47
avr 82.5
(3) 		44.7
(-3) 		65.1
(0.2) 		76.4
(2) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 13.1
(-3)
A 		84.9
(3)
P 		31.1
(-1.5)
A 		60.6
(1)
M 		60.6
(1)
A 		52.6
(0.3)
A 		72
B 61.7
(-0.9)
A 		68.7
(2.6)
P 		57.6
(-3)
P 		69.5
(3)
A 		68.3
(2.4)
P 		65.3
(0.9)
P 		12
C 56.6
(-1.5)
A 		39.5
(-3)
A 		55.6
(-1.6)
A 		49.5
(-2.1)
A 		107.8
(3)
P 		50.7
(-2)
A 		68
avr 43.8
(-3) 		64.4
(0.5) 		48.1
(-2.3) 		59.9
(-0.2) 		78.9
(3) 		56.2
(-0.9) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 27.4
(3)
A 		6.6
(-3)
A 		19.8
(0.8)
A 		16
(-0.3)
P 		21
B 24.9
(3)
M 		14
(-0.9)
A 		13.2
(-1.2)
A 		8.3
(-3)
P 		17
C 31.1
(3)
A 		13.6
(-3)
A 		21.8
(-0.2)
A 		13.7
(-3)
P 		18
avr 27.8
(3) 		11.4
(-3) 		18.3
(-0.5) 		12.7
(-2.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.4
(-3)
A 		30.2
(3)
P 		6.8
(-2.1)
A 		15.4
(-0.2)
M 		18.3
(0.4)
A 		12.8
(-0.8)
A 		28
B 21.5
(0.3)
A 		22.9
(0.9)
P 		14
(-3)
P 		18.4
(-1.1)
A 		27.8
(3)
P 		24.3
(1.5)
P 		14
C 21
(-0.3)
A 		12.1
(-2.5)
A 		14.1
(-2)
A 		10
(-3)
A 		34.9
(3)
P 		17
(-1.3)
A 		25
avr 15
(-1.7) 		21.7
(0.9) 		11.6
(-3) 		14.6
(-1.8) 		27
(3) 		18
(-0.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17765
Sequence Type Exemplar sequence
Representative Public ID C08A9.6 NCBI
Target Description C08A9.6 /REP_DB=WormBase Gene ID /WP=CE06788 /TR=Q17809 /GB=AAB53814.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078364 NCBI Caenorhabditis elegans C08A9.6 (C08A9.6) mRNA, complete cds. 11/11 None
SNAP00000037424 ENSEMBL cdna:SNAP chromosome:CEL140:X:17094403:17096449:-1 11/11 None
GENEFINDER00000037430 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17094403:17096449:-1 11/11 None
C08A9.6 ENSEMBL cdna:known chromosome:CEL140:X:17094216:17096449:-1 gene:C08A9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17094402-17096449(-) 100.0 100.0
chrX:17102757-17104783(-) 91.59 91.59
Public Domain and Genome References
Gene Title
Ensembl C08A9.6
Entrez Gene 181749 Entrez gene
SwissProt Q17809 EMBL-EBI
WormBase CE06788 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53814 Hypothetical protein C08A9.6 [Caenorhabditis elegans] ref|NP_510765.1| C08A9.6 [Caenorhabditis elegans] 0.0
blast AAB53820 Hypothetical protein C08A9.8 [Caenorhabditis elegans] ref|NP_510767.1| C08A9.8 [Caenorhabditis elegans] 1.0E-123
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 1.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183184_AT
atgggaatattacccccacttcatctattaccgtgagacgctaggacacttcgaggcaaa
tcttcgaggcgagccctgggatggagaagctcatattgacgacgacgatgatgatattat
ttacgagggatattgggaagccgataaaaatagcagcaaactaacatctgagacacaaga
cagtgttgatgaaaccatagtggaggaggttccactggagccagacacaaacgttttcga
ccgcgaagaagaagtagtgacgttcagaagaccagaagcatttgcaagagctgttgataa
tcactttggaccaccaacggaacatttgccagactcatcagcaaaaatctattcaacaaa
tattaaatccgcttcatgcgcaccggagagcactgaaccaccgaaaagcgacaacagtgc
tcagcatattggagaacaagtacatcggctttttgctcaatacccggaacgttcaaagct
gtttagagaaacgcttttcaagacgattcttgcacttgaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGAATATTACCCCCACTTCATC 433 47 423 Antisense
CTAGGACACTTCGAGGCAAATCTTC 696 221 463 Antisense
GAGAAGCTCATATTGACGACGACGA 47 393 506 Antisense
GTGGAGGAGGTTCCACTGGAGCCAG 57 489 622 Antisense
GAGCCAGACACAAACGTTTTCGACC 226 385 640 Antisense
TGTTGATAATCACTTTGGACCACCA 598 563 714 Antisense
TTGGACCACCAACGGAACATTTGCC 635 705 728 Antisense
TATTAAATCCGCTTCATGCGCACCG 630 663 783 Antisense
TCATGCGCACCGGAGAGCACTGAAC 564 621 796 Antisense
GAGCACTGAACCACCGAAAAGCGAC 107 385 810 Antisense
AAGACGATTCTTGCACTTGAAGAGC 17 153 922 Antisense
Sequence Source Affymetrix Proprietary Database