[Home] | [Total List]

[183182_at]

Description F59B1.4 /REP_DB=WormBase Gene ID /WP=CE17945 /TR=O61878 /GB=AAC17664.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 2.5
(-3)
A 		6
(-0.2)
A 		9.9
(3)
A 		6.5
(0.2)
A 		7
B 4
(-2.7)
A 		2.5
(-3)
A 		2.2
(-3)
A 		39.3
(3)
A 		37
C 6.3
(-2.1)
A 		6
(-2.2)
A 		1.7
(-3)
A 		33
(3)
A 		31
avr 4.3
(-3) 		4.8
(-2.9) 		4.6
(-2.9) 		26.3
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 8.7
(2.5)
A 		9.2
(3)
A 		4.9
(-1)
A 		5.4
(-0.6)
A 		3
(-2.8)
A 		2.8
(-3)
A 		6
B 6.6
(1.5)
A 		8.2
(3)
A 		2
(-3)
A 		6.3
(1.2)
A 		4
(-1.1)
A 		3.4
(-1.6)
A 		6
C 2.9
(-3)
A 		4.4
(-1)
A 		4.2
(-1.2)
A 		4.3
(-1.1)
A 		7.3
(3)
A 		6.7
(2.2)
A 		4
avr 6.1
(1) 		7.3
(3) 		3.7
(-3) 		5.3
(-0.3) 		4.8
(-1.2) 		4.3
(-2) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		1.3
(-1.6)
A 		2.6
(3)
A 		1
(-2.6)
A 		2
B 1.3
(-2.4)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		8.4
(3)
A 		8
C 2.1
(-1.2)
A 		1.7
(-1.7)
A 		0.6
(-3)
A 		5.6
(3)
A 		5
avr 1.4
(-2.7) 		1.2
(-3) 		1.2
(-3) 		5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.6
(-0.9)
A 		3.3
(3)
A 		1.1
(-2.1)
A 		1.4
(-1.4)
A 		0.9
(-2.5)
A 		0.7
(-3)
A 		3
B 2.3
(1.9)
A 		2.7
(3)
A 		0.5
(-3)
A 		1.7
(0.3)
A 		1.6
(0)
A 		1.3
(-0.8)
A 		2
C 1.1
(-2.2)
A 		1.3
(-1.4)
A 		1.1
(-2.2)
A 		0.9
(-3)
A 		2.4
(3)
A 		2.2
(2.2)
A 		2
avr 1.7
(0.2) 		2.4
(3) 		0.9
(-3) 		1.3
(-1.4) 		1.6
(-0.2) 		1.4
(-1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183182_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14909
Sequence Type Exemplar sequence
Representative Public ID F59B1.4 NCBI
Target Description F59B1.4 /REP_DB=WormBase Gene ID /WP=CE17945 /TR=O61878 /GB=AAC17664.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071617 NCBI Caenorhabditis elegans F59B1.4 (F59B1.4) mRNA, complete cds. 11/11 None
GENEFINDER00000030025 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3624260:3626859:-1 10/11 None
F59B1.4 ENSEMBL cdna:known chromosome:CEL140:V:3624837:3626859:-1 gene:F59B1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3624836-3626859(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B1.4
Entrez Gene 186589 Entrez gene
SwissProt O61878 EMBL-EBI
WormBase CE17945 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17664 Hypothetical protein F59B1.4 [Caenorhabditis elegans] ref|NP_504018.1| F59B1.4 [Caenorhabditis elegans] 1.0E-143
blast AAC17664 Hypothetical protein F59B1.4 [Caenorhabditis elegans] ref|NP_504018.1| F59B1.4 [Caenorhabditis elegans] 1.0E-133
blast CAE62542 Hypothetical protein CBG06651 [Caenorhabditis briggsae] 6.0E-36
blast CAE62543 Hypothetical protein CBG06652 [Caenorhabditis briggsae] 4.0E-29
blast CAE62542 Hypothetical protein CBG06651 [Caenorhabditis briggsae] 3.0E-26
blast CAE62543 Hypothetical protein CBG06652 [Caenorhabditis briggsae] 4.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504018.1 6 15-37,50-72,82-104,121-143,183-205,226-248
F59B1.4 6 15-37,50-72,82-104,121-143,183-205,226-248
GENEFINDER00000030025 7 15-37,58-80,95-117,138-160,200-222,243-264,279-301
Sequence
Target Sequence 
>C. ELEGANS:183182_AT
acttattcttctatgtctccaacattttctatggaaccattgcgaataacctactaaatg
cattttggtccgccgcaatttggatattcttattcgctggattcgtctatttcacattta
tgatactggtggttcggctgaaaatcgttgcgagaaagggaaaaatctttgatttttcga
atcggagttattatattttttgtgttatattggctttatacataatcggcccaattagtg
cgatttggatcagatcatactgcacgagggatcagcaaatagcttatgttacagagcact
tcccaaaaaatctgatggttttcgataatcccagtgtccacgtggatgtgagtgtatcca
accaacgaatgctaataattctcatgttaattctgattttctccggattcatgatctaca
gtctactctacttgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTATTCTTCTATGTCTCCAACAT 200 103 185 Antisense
GGAACCATTGCGAATAACCTACTAA 684 527 217 Antisense
TACTAAATGCATTTTGGTCCGCCGC 568 645 236 Antisense
GGTCCGCCGCAATTTGGATATTCTT 321 501 251 Antisense
TATTCGCTGGATTCGTCTATTTCAC 477 663 275 Antisense
GGTGGTTCGGCTGAAAATCGTTGCG 585 491 312 Antisense
CTTATGTTACAGAGCACTTCCCAAA 368 221 467 Antisense
TCGATAATCCCAGTGTCCACGTGGA 329 601 506 Antisense
GAGTGTATCCAACCAACGAATGCTA 537 401 534 Antisense
GATTTTCTCCGGATTCATGATCTAC 528 429 579 Antisense
GATCTACAGTCTACTCTACTTGATG 547 419 597 Antisense
Sequence Source Affymetrix Proprietary Database