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[183181_at]

Description F28F9.3 /REP_DB=WormBase Gene ID /WP=CE09764 /TR=Q94194 /GB=AAB09124.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      4grp_high_8_8 > 26      6grp_total > 22      4grp_total > 46      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 341.1
(3)
P 		311
(1.9)
P 		208.8
(-1.8)
M 		176.8
(-3)
A 		164
B 400.2
(3)
P 		270.1
(-1.4)
P 		224.8
(-2.9)
P 		221.6
(-3)
P 		179
C 321.6
(2.6)
P 		253.6
(-0.9)
A 		214
(-3)
A 		328.8
(3)
P 		115
avr 354.3
(3) 		278.2
(-0.3) 		215.9
(-3) 		242.4
(-1.9) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 218.3
(-0.1)
M 		251.5
(1.4)
P 		210.5
(-0.4)
P 		286.9
(3)
P 		164.2
(-2.5)
P 		153.5
(-3)
P 		133
B 245.6
(0.6)
M 		263.6
(1.1)
M 		330.8
(3)
P 		214.6
(-0.3)
A 		216.2
(-0.3)
M 		119.4
(-3)
P 		211
C 273.4
(3)
P 		259.5
(2.4)
A 		187.3
(-0.5)
M 		220
(0.9)
M 		178.9
(-0.8)
P 		123.9
(-3)
M 		150
avr 245.8
(2.4) 		258.2
(3) 		242.9
(2.3) 		240.5
(2.2) 		186.4
(-0.4) 		132.3
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 124.2
(3)
P 		67.5
(-0.5)
P 		54.6
(-1.2)
M 		25.9
(-3)
A 		98
B 127.6
(3)
P 		66.7
(-1.5)
P 		52.1
(-2.6)
P 		47.2
(-3)
P 		80
C 106.5
(3)
P 		72.9
(-0.9)
A 		74.6
(-0.7)
A 		55.4
(-3)
P 		51
avr 119.4
(3) 		69
(-0.9) 		60.4
(-1.6) 		42.8
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 40.2
(-2.7)
M 		89.4
(3)
P 		45.8
(-2)
P 		72.8
(1.1)
P 		49.6
(-1.6)
P 		37.4
(-3)
P 		52
B 85.5
(2.7)
M 		87.8
(3)
M 		80.3
(1.9)
P 		56.8
(-1.3)
A 		87.9
(3)
M 		44.5
(-3)
P 		43
C 101.3
(3)
P 		79.2
(0.8)
A 		47.7
(-2.4)
M 		44.2
(-2.7)
M 		57.9
(-1.4)
P 		41.5
(-3)
M 		60
avr 75.7
(1.7) 		85.5
(3) 		57.9
(-0.7) 		57.9
(-0.7) 		65.1
(0.2) 		41.1
(-3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183181_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11177
Sequence Type Exemplar sequence
Representative Public ID F28F9.3 NCBI
Target Description F28F9.3 /REP_DB=WormBase Gene ID /WP=CE09764 /TR=Q94194 /GB=AAB09124.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068021(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068021 NCBI Caenorhabditis elegans F28F9.3 (F28F9.3) mRNA, complete cds. 9/11 None
F28F9.3 ENSEMBL cdna:known chromosome:CEL140:IV:3833871:3834318:1 gene:F28F9.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002097 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3833875-3834324(+) 58.33 100.0
Public Domain and Genome References
Gene Title
Ensembl F28F9.3
Entrez Gene 185078 Entrez gene
SwissProt Q94194 EMBL-EBI
WormBase CE36590 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09124 Hypothetical protein F28F9.3 [Caenorhabditis elegans] ref|NP_500422.2| F28F9.3 [Caenorhabditis elegans] 3.0E-32
Sequence
Target Sequence 
>C. ELEGANS:183181_AT
atgccacgtttcaaagtttatttcaggatttcggtaatctcgagaatgcttgctcgacta
atcgctttgctcattgtgctcgtcgcatttgcgaccgcgtggactgtggacggatttcaa
caacaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCACGTTTCAAAGTTTATTTCA 234 39 13 Antisense
ATTTCAGGATTTCGGTAATCTCGAG 577 15 32 Antisense
TCGGTAATCTCGAGAATGCTTGCTC 370 605 43 Antisense
GAATGCTTGCTCGACTAATCGCTTT 527 331 56 Antisense
CTTGCTCGACTAATCGCTTTGCTCA 312 219 61 Antisense
TCGACTAATCGCTTTGCTCATTGTG 621 601 66 Antisense
TCATTGTGCTCGTCGCATTTGCGAC 387 619 83 Antisense
CTCGTCGCATTTGCGACCGCGTGGA 198 233 91 Antisense
GACCGCGTGGACTGTGGACGGATTT 324 381 105 Antisense
GGACTGTGGACGGATTTCAACAACA 262 525 113 Antisense
GTGGACGGATTTCAACAACAATTTT 17 487 118 Antisense
Sequence Source Affymetrix Proprietary Database