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[183180_s_at]

Description H03G16.2 /REP_DB=WormBase Gene ID /WP=CE18802 /TR=Q9XU24 /GB=CAB07224.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 36.2
(0.6)
A 		8.5
(-3)
A 		54.9
(3)
P 		30.6
(-0.1)
A 		46
B 58.8
(0.5)
M 		72
(3)
P 		40.7
(-3)
M 		70
(2.6)
M 		31
C 52.3
(-2.6)
A 		48.6
(-3)
A 		89.9
(1.9)
P 		99.3
(3)
P 		51
avr 49.1
(-1.4) 		43
(-3) 		61.8
(1.8) 		66.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 42.4
(-1.9)
A 		61.1
(0.8)
A 		76.1
(3)
P 		43.7
(-1.7)
A 		34.5
(-3)
A 		60.5
(0.8)
P 		42
B 20.8
(-3)
A 		53.8
(1.1)
P 		69.1
(3)
M 		36.3
(-1.1)
A 		33.3
(-1.4)
P 		31.1
(-1.7)
P 		48
C 27.3
(-2.3)
A 		72.7
(3)
P 		46.7
(-0)
A 		43.2
(-0.4)
A 		39.8
(-0.8)
A 		20.9
(-3)
A 		52
avr 30.2
(-3) 		62.5
(2.7) 		64
(3) 		41.1
(-1.1) 		35.9
(-2) 		37.5
(-1.7) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 13.2
(2.5)
A 		1.9
(-3)
A 		14.3
(3)
P 		4.5
(-1.7)
A 		12
B 18.8
(3)
M 		17.8
(2.4)
P 		9.4
(-3)
M 		14.9
(0.5)
M 		9
C 17.3
(-1.9)
A 		14
(-3)
A 		31.3
(3)
P 		16.7
(-2.1)
P 		17
avr 16.4
(1.4) 		11.2
(-3) 		18.3
(3) 		12
(-2.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.8
(-3)
A 		21.7
(3)
A 		16.6
(0.8)
P 		11.1
(-1.6)
A 		10.4
(-1.9)
A 		14.7
(-0)
P 		14
B 7.3
(-3)
A 		17.9
(3)
P 		16.8
(2.4)
M 		9.6
(-1.7)
A 		13.5
(0.5)
P 		11.6
(-0.6)
P 		11
C 10.1
(-1.8)
A 		22.2
(3)
P 		11.9
(-1.1)
A 		8.7
(-2.3)
A 		12.9
(-0.7)
A 		7
(-3)
A 		15
avr 8.4
(-3) 		20.6
(3) 		15.1
(0.3) 		9.8
(-2.3) 		12.3
(-1.1) 		11.1
(-1.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183180_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17762
Sequence Type Exemplar sequence
Representative Public ID H03G16.2 NCBI
Target Description H03G16.2 /REP_DB=WormBase Gene ID /WP=CE18802 /TR=Q9XU24 /GB=CAB07224.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078103(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078103 NCBI Caenorhabditis elegans H03G16.2 (H03G16.2) mRNA, complete cds. 10/11 None
SNAP00000037554 ENSEMBL cdna:SNAP chromosome:CEL140:X:15067449:15069258:-1 11/11 None
GENEFINDER00000037558 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15067449:15069258:-1 11/11 None
H03G16.2 ENSEMBL cdna:known chromosome:CEL140:X:15067449:15069258:-1 gene:H03G16.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15067448-15069258(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H03G16.2
Entrez Gene 181601 Entrez gene
SwissProt Q9XU24 EMBL-EBI
WormBase CE34042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07224 Hypothetical protein H03G16.2 [Caenorhabditis elegans] ref|NP_510504.2| H03G16.2 [Caenorhabditis elegans] 0.0
blast CAE63265 Hypothetical protein CBG07639 [Caenorhabditis briggsae] 0.0
blast CAE63265 Hypothetical protein CBG07639 [Caenorhabditis briggsae] 1.0E-179
Sequence
Target Sequence 
>C. ELEGANS:183180_S_AT
ggttcaaggtggggctgcagcaattgatgatatatcttataacacaactgctatctatca
gtgtcaaatgataccgcatattcccaaacttcaaaacgtcacaaaatcagtttgtaactc
tataaaatgcgactttgattctggagactgcttgaaaaagatgggcaaaaagtgggaagt
tacaagtgaagcagtgggaccgaggccgaccgggattttgaaaccactaggcaagttctc
aacaagttttgggaaaaatgttgattctttagaaggagattatggttatgtcaaaggacc
cggtgatgctagtttgtctcttgggaagttgaaaatcccaagaacctatggattgcagtt
ttgttacttctccgaattaattggaactgattttgaagtgattttgaggccggaggaatc
gagtgaaaaacttgtattatacaatgtaacctctgttgaccggttctcccaagaatggca
atgcaaacgagtatttctttcagtaaatggaacgattgacttctcaataaggaacctgcg
aaatgagttctcatactttgcactcgatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCAAGGTGGGGCTGCAGCAATT 607 505 450 Antisense
TACCGCATATTCCCAAACTTCAAAA 475 649 521 Antisense
ATGCGACTTTGATTCTGGAGACTGC 190 41 576 Antisense
AGTGAAGCAGTGGGACCGAGGCCGA 466 59 634 Antisense
GAAACCACTAGGCAAGTTCTCAACA 496 359 669 Antisense
AAAGGACCCGGTGATGCTAGTTTGT 348 121 742 Antisense
GATGCTAGTTTGTCTCTTGGGAAGT 220 411 754 Antisense
GATTGCAGTTTTGTTACTTCTCCGA 42 435 800 Antisense
ATGTAACCTCTGTTGACCGGTTCTC 500 45 893 Antisense
GACCGGTTCTCCCAAGAATGGCAAT 103 383 907 Antisense
AGTTCTCATACTTTGCACTCGATCA 403 63 995 Antisense
Sequence Source Affymetrix Proprietary Database