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[183178_at]

Description T22E5.1 /REP_DB=WormBase Gene ID /WP=CE04991 /TR=Q22683 /GB=AAA83616.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 10      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1196
1 2 3 4 range
A 285.8
(-2.7)
P 		237.5
(-3)
P 		231
(-3)
P 		1369.5
(3)
P 		1139
B 234.4
(-2.7)
P 		368.3
(-1.9)
P 		173.8
(-3)
P 		1260.8
(3)
P 		1087
C 286.3
(-2.8)
P 		346.9
(-2.4)
P 		250
(-3)
P 		1260.7
(3)
P 		1011
avr 268.8
(-2.7) 		317.6
(-2.4) 		218.3
(-3) 		1297
(3) 		1079

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 425.3
(0.6)
P 		347.6
(-1.8)
P 		504.8
(3)
P 		307.7
(-3)
P 		317.3
(-2.7)
P 		494.3
(2.7)
P 		197
B 483.7
(0.3)
P 		394.1
(-1.7)
P 		370.4
(-2.2)
P 		405.6
(-1.4)
P 		336.2
(-3)
P 		601
(3)
P 		265
C 481.3
(1)
P 		417.9
(-0.2)
P 		264.6
(-3)
P 		368.5
(-1.1)
P 		325.5
(-1.9)
P 		587.5
(3)
P 		323
avr 463.4
(0.5) 		386.5
(-1.5) 		379.9
(-1.6) 		360.6
(-2.1) 		326.3
(-3) 		560.9
(3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 104
(-0.9)
P 		51.6
(-3)
P 		60.4
(-2.6)
P 		200.5
(3)
P 		149
B 74.8
(-2.1)
P 		91
(-1.7)
P 		40.3
(-3)
P 		268.7
(3)
P 		228
C 94.8
(-2.6)
P 		99.7
(-2.4)
P 		87.1
(-3)
P 		212.6
(3)
P 		126
avr 91.2
(-2) 		80.8
(-2.3) 		62.6
(-3) 		227.3
(3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 78.4
(-2.9)
P 		123.6
(3)
P 		109.9
(1.2)
P 		78
(-3)
P 		95.8
(-0.7)
P 		120.4
(2.6)
P 		46
B 168.3
(0.5)
P 		131.2
(-1.2)
P 		89.9
(-3)
P 		107.4
(-2.2)
P 		136.6
(-0.9)
P 		224.1
(3)
P 		134
C 178.4
(2.2)
P 		127.5
(-0.2)
P 		67.3
(-3)
P 		74.1
(-2.7)
P 		105.3
(-1.2)
P 		196.7
(3)
P 		129
avr 141.7
(0.5) 		127.4
(-0.4) 		89
(-2.8) 		86.5
(-3) 		112.6
(-1.3) 		180.4
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17259
Sequence Type Exemplar sequence
Representative Public ID T22E5.1 NCBI
Target Description T22E5.1 /REP_DB=WormBase Gene ID /WP=CE04991 /TR=Q22683 /GB=AAA83616.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076676 NCBI Caenorhabditis elegans T22E5.1 (T22E5.1) mRNA, complete cds. 11/11 None
SNAP00000012236 ENSEMBL cdna:SNAP chromosome:CEL140:X:6412936:6413394:1 11/11 None
T22E5.1 ENSEMBL cdna:known chromosome:CEL140:X:6412936:6413394:1 gene:T22E5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012243 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6412935-6413394(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22E5.1
Entrez Gene 188743 Entrez gene
SwissProt Q22683 EMBL-EBI
WormBase CE04991 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83616 Hypothetical protein T22E5.1 [Caenorhabditis elegans] ref|NP_509077.1| T22E5.1 [Caenorhabditis elegans] 2.0E-34
blast CAE61254 Hypothetical protein CBG05060 [Caenorhabditis briggsae] 3.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509077.1 1 5-24
T22E5.1 1 5-24
SNAP00000012236 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:183178_AT
aattcatcacacttcttctgattgcttgcctttttgcaggagtatgcagtaaatttatcg
caatgattgaccgagcagaagttgatcctgaggagactatagacttggaggaggatcgca
aggtgtgcttctgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCATCACACTTCTTCTGATTGC 296 177 23 Antisense
CATCACACTTCTTCTGATTGCTTGC 543 213 27 Antisense
TCTTCTGATTGCTTGCCTTTTTGCA 580 617 36 Antisense
GATTGCTTGCCTTTTTGCAGGAGTA 655 433 42 Antisense
GCAGGAGTATGCAGTAAATTTATCG 622 309 58 Antisense
TTATCGCAATGATTGACCGAGCAGA 200 681 77 Antisense
GACCGAGCAGAAGTTGATCCTGAGG 530 381 91 Antisense
GATCCTGAGGAGACTATAGACTTGG 555 413 106 Antisense
GACTATAGACTTGGAGGAGGATCGC 308 369 117 Antisense
GGAGGATCGCAAGGTGTGCTTCTGC 154 517 132 Antisense
AGGATCGCAAGGTGTGCTTCTGCTG 314 57 134 Antisense
Sequence Source Affymetrix Proprietary Database