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[183177_at] 7TM chemoreceptor, srg family

Description T07H8.5 /REP_DB=WormBase Gene ID /WP=CE18226 /TR=O61892 /GB=AAC17679.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 07      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 71
(3)
A 		22.6
(-3)
A 		52.3
(0.7)
A 		57.1
(1.3)
A 		48
B 72.2
(2)
A 		48.5
(-0)
A 		83.1
(3)
A 		14.7
(-3)
A 		68
C 72.7
(0.3)
A 		32.7
(-3)
A 		44.2
(-2.1)
A 		106.5
(3)
A 		74
avr 72
(3) 		34.6
(-3) 		59.9
(1.1) 		59.4
(1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 81.9
(3)
A 		56.9
(-0)
A 		47.2
(-1.2)
A 		32.5
(-3)
A 		54.3
(-0.4)
A 		35.7
(-2.6)
A 		49
B 39.1
(0.2)
A 		44.2
(0.8)
A 		28.6
(-0.9)
A 		51.8
(1.6)
A 		65
(3)
A 		8.7
(-3)
A 		56
C 27.1
(-0.8)
A 		64.5
(3)
A 		6.1
(-3)
A 		28.6
(-0.7)
A 		39.6
(0.4)
A 		22.1
(-1.4)
A 		58
avr 49.4
(1.9) 		55.2
(3) 		27.3
(-2.1) 		37.6
(-0.2) 		53
(2.6) 		22.2
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.9
(3)
A 		4.9
(-3)
A 		13.7
(-0.5)
A 		8.4
(-2)
A 		21
B 23
(3)
A 		12
(-0.3)
A 		19.3
(1.9)
A 		3.1
(-3)
A 		20
C 24.1
(3)
A 		9.4
(-3)
A 		15.4
(-0.6)
A 		18
(0.5)
A 		15
avr 24.3
(3) 		8.8
(-3) 		16.1
(-0.2) 		9.8
(-2.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15.1
(0.4)
A 		20.2
(3)
A 		10.3
(-2)
A 		8.3
(-3)
A 		16.4
(1.1)
A 		8.7
(-2.8)
A 		12
B 13.6
(-0.3)
A 		14.7
(-0)
A 		6.9
(-2)
A 		13.7
(-0.3)
A 		26.4
(3)
A 		3.2
(-3)
A 		23
C 10.1
(-0.2)
A 		19.7
(3)
A 		1.5
(-3)
A 		5.7
(-1.6)
A 		12.8
(0.7)
A 		7.4
(-1.1)
A 		18
avr 12.9
(0.3) 		18.2
(2.9) 		6.2
(-3) 		9.2
(-1.5) 		18.5
(3) 		6.4
(-2.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12064
Sequence Type Exemplar sequence
Representative Public ID T07H8.5 NCBI
Target Description T07H8.5 /REP_DB=WormBase Gene ID /WP=CE18226 /TR=O61892 /GB=AAC17679.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072357 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-31) (srg-31) mRNA, complete cds. 11/11 None
T07H8.5 ENSEMBL cdna:known chromosome:CEL140:V:6953428:6956490:-1 gene:T07H8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6954143-6956491(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-31
Ensembl T07H8.5
Entrez Gene 188260 Entrez gene
SwissProt O61892 EMBL-EBI
WormBase CE18226 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504758 Serpentine Receptor, class G (gamma) family member (srg-31) [Caenorhabditis elegans] gb|AAC17679.1| Serpentine receptor, class g (gamma) protein 31 [Caenorhabditis elegans] sp|O61892|SRG31_CAEEL Serpentine receptor class gamma-31 (Protein srg-31) 1.0E-180
blast CAE71973 Hypothetical protein CBG19047 [Caenorhabditis briggsae] 1.0E-116
blast AAC47993 Serpentine receptor, class g (gamma) protein 33 [Caenorhabditis elegans] ref|NP_505140.1| Serpentine Receptor, class G (gamma) family member (srg-33) [Caenorhabditis elegans] sp|O01538|SRG33_CAEEL Serpentine receptor class gamma-33 (Protein srg-33) 8.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504758.1 7 5-27,36-58,87-109,130-152,176-198,219-241,256-278
T07H8.5 7 5-27,36-58,87-109,130-152,176-198,219-241,256-278
Sequence
Target Sequence 
>C. ELEGANS:183177_AT
gaactcaagcagatcttccgtttttatattcattcatacttgtttggatggtagttacgg
tgcttctcagcataattgccaatataatttgctggttcaaaatatcaaaatatagcaaag
cggctcgtcaacaaagcgattatcgtctttttctggtatcctttgtaacatttgtgatca
actgcggagtattttctattgctatgctaaacaaaatatcagcggacattgacccatcga
aactattattgagcagccgaattgcccaactattaagcccatttgcaaacgacttgctct
ctttgtcaactccctatgttttgattattttcagcaaacggatccgtcaatccatcaaga
acttattcataaaaggaacagttgcgccttcttctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTCAAGCAGATCTTCCGTTTTT 691 349 518 Antisense
TGGTAGTTACGGTGCTTCTCAGCAT 391 551 566 Antisense
GCAAAGCGGCTCGTCAACAAAGCGA 443 315 632 Antisense
ATCGTCTTTTTCTGGTATCCTTTGT 199 35 659 Antisense
TATCAGCGGACATTGACCCATCGAA 15 655 734 Antisense
ATTGAGCAGCCGAATTGCCCAACTA 507 5 765 Antisense
TGCCCAACTATTAAGCCCATTTGCA 24 585 780 Antisense
TGCAAACGACTTGCTCTCTTTGTCA 27 577 801 Antisense
TCTTTGTCAACTCCCTATGTTTTGA 487 615 817 Antisense
CAAACGGATCCGTCAATCCATCAAG 620 191 852 Antisense
AAGGAACAGTTGCGCCTTCTTCTAT 488 161 890 Antisense
Sequence Source Affymetrix Proprietary Database