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[183176_at]

Description T07C12.8 /REP_DB=WormBase Gene ID /WP=CE06390 /TR=Q22286 /GB=CAA98287.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 1.9
(-3)
A 		56.4
(2.5)
A 		41.9
(1)
A 		61.4
(3)
A 		60
B 6.3
(-3)
A 		46.4
(2.6)
P 		49.6
(3)
A 		28
(0)
A 		43
C 22.1
(-0.7)
A 		35.9
(1.8)
P 		42.2
(3)
P 		9.4
(-3)
A 		33
avr 10.1
(-3) 		46.2
(3) 		44.6
(2.7) 		32.9
(0.8) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 23.3
(-2.8)
A 		48.9
(-0.6)
A 		52.2
(-0.3)
P 		90.8
(3)
A 		49.9
(-0.5)
A 		20.5
(-3)
A 		70
B 31.6
(-1.2)
A 		55
(0.6)
A 		47.8
(0.1)
A 		84.9
(3)
P 		57.6
(0.9)
A 		8.6
(-3)
A 		76
C 1.3
(-3)
A 		48.8
(1.9)
M 		3.8
(-2.7)
A 		59.6
(3)
A 		34.3
(0.4)
A 		22
(-0.9)
A 		58
avr 18.7
(-2.8) 		50.9
(0.3) 		34.6
(-1.3) 		78.4
(3) 		47.3
(-0) 		17
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.7
(-3)
A 		12.3
(3)
A 		11
(2.3)
A 		9
(1.3)
A 		12
B 2
(-3)
A 		11.5
(3)
P 		11.5
(3)
A 		6
(-0.5)
A 		10
C 7.3
(-0.4)
A 		10.3
(1)
P 		14.7
(3)
P 		1.6
(-3)
A 		13
avr 3.3
(-3) 		11.4
(2.3) 		12.4
(3) 		5.5
(-1.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.3
(-3)
A 		17.4
(1.2)
A 		11.4
(-0.7)
P 		23
(3)
A 		15.1
(0.5)
A 		5
(-2.8)
A 		19
B 11
(-0.7)
A 		18.3
(1.5)
A 		11.6
(-0.5)
A 		22.5
(2.7)
P 		23.4
(3)
A 		3.2
(-3)
A 		20
C 0.5
(-3)
A 		14.9
(3)
M 		1
(-2.8)
A 		12
(1.8)
A 		11.1
(1.4)
A 		7.4
(-0.1)
A 		14
avr 5.3
(-3) 		16.9
(2) 		8
(-1.8) 		19.2
(3) 		16.5
(1.8) 		5.2
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12193
Sequence Type Exemplar sequence
Representative Public ID T07C12.8 NCBI
Target Description T07C12.8 /REP_DB=WormBase Gene ID /WP=CE06390 /TR=Q22286 /GB=CAA98287.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073161 NCBI Caenorhabditis elegans T07C12.8 (T07C12.8) mRNA, complete cds. 11/11 None
SNAP00000001531 ENSEMBL cdna:SNAP chromosome:CEL140:V:9958171:9959465:1 11/11 None
GENEFINDER00000001536 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9953817:9959465:1 11/11 None
T07C12.8 ENSEMBL cdna:known chromosome:CEL140:V:9954819:9959465:1 gene:T07C12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9954818-9959465(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07C12.8
Entrez Gene 188217 Entrez gene
SwissProt Q22286 EMBL-EBI
WormBase CE28954 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98287 Hypothetical protein T07C12.8 [Caenorhabditis elegans] ref|NP_505562.1| T07C12.8 [Caenorhabditis elegans] 0.0
blast CAE72286 Hypothetical protein CBG19414 [Caenorhabditis briggsae] 0.0
blast CAA98287 Hypothetical protein T07C12.8 [Caenorhabditis elegans] ref|NP_505562.1| T07C12.8 [Caenorhabditis elegans] 1.0E-143
blast CAE72286 Hypothetical protein CBG19414 [Caenorhabditis briggsae] 1.0E-124
blast CAA98286 Hypothetical protein T07C12.7 [Caenorhabditis elegans] ref|NP_505561.1| T07C12.7 [Caenorhabditis elegans] sp|Q22285|YFMO_CAEEL Hypothetical UPF0205 protein T07C12.7 in chromosome V precursor 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 3.1E-68
Sequence
Target Sequence 
>C. ELEGANS:183176_AT
gttcattatggagccccaacaagccaaaaaattacgaatcccatgaaagatgagaagcga
aaaagcaacgatttaagaggtccaaggactggtccaatgtttgcttcaatatgctcaaat
gtggattgtaattttgatgataatacattgtgcaactatttgacaagctcaacaaatgtc
agcgcagaagatggaagcttattgaaaaagtgggcactttccaatcgcagtgtcttgaac
tcattgacaggaattccatctgatctttccaaaggaggatattttctttatgccggtgga
acaacagcaactcctggtgacacttttattttatcaacaaatcaaccagttactataaca
gaaccggcaagagttgatttctttgtctatcaagcaggaatacgaggacaattcagagtt
tgtattgatgataatgaagattgtccagttgttttagaaggaaaagacatcgatgtgaac
tctcaaaaatggaagaattattacttcgaactcaatccaggacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCATTATGGAGCCCCAACAAGCC 627 443 2407 Antisense
GGACTGGTCCAATGTTTGCTTCAAT 511 517 2492 Antisense
GCACTTTCCAATCGCAGTGTCTTGA 297 317 2620 Antisense
ATCGCAGTGTCTTGAACTCATTGAC 74 37 2630 Antisense
ATTCCATCTGATCTTTCCAAAGGAG 590 5 2659 Antisense
GGATATTTTCTTTATGCCGGTGGAA 127 509 2683 Antisense
GCCGGTGGAACAACAGCAACTCCTG 396 283 2698 Antisense
GCAACTCCTGGTGACACTTTTATTT 541 319 2713 Antisense
GAAGATTGTCCAGTTGTTTTAGAAG 601 337 2842 Antisense
AAGACATCGATGTGAACTCTCAAAA 479 153 2870 Antisense
TACTTCGAACTCAATCCAGGACAAC 370 645 2908 Antisense
Sequence Source Affymetrix Proprietary Database