[Home] | [Total List]

[183175_at]

Description T28F2.1 /REP_DB=WormBase Gene ID /WP=CE14351 /TR=O01660 /GB=AAB53053.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 54.6
(3)
A 		28.7
(-2.1)
A 		52
(2.5)
A 		24
(-3)
A 		31
B 43.5
(0)
A 		66.1
(3)
A 		20.4
(-3)
A 		22.4
(-2.7)
A 		46
C 68
(3)
A 		36
(-1)
A 		20.2
(-3)
A 		67.3
(2.9)
A 		48
avr 55.4
(3) 		43.6
(0.1) 		30.9
(-3) 		37.9
(-1.3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 59.5
(3)
A 		31.6
(-0.2)
A 		17.2
(-1.9)
A 		7.5
(-3)
A 		18.1
(-1.8)
A 		16.3
(-2)
A 		52
B 64.6
(3)
A 		33.9
(-0.4)
A 		39
(0.1)
A 		44.9
(0.8)
A 		10.8
(-3)
A 		56.4
(2.1)
A 		54
C 30
(-2.6)
A 		93.2
(3)
A 		46.7
(-1.1)
A 		51.2
(-0.7)
A 		33.4
(-2.3)
A 		25.8
(-3)
A 		67
avr 51.4
(2.7) 		52.9
(3) 		34.3
(-0.5) 		34.5
(-0.4) 		20.8
(-3) 		32.8
(-0.8) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.9
(3)
A 		6.2
(-2)
A 		13.6
(0.7)
A 		3.5
(-3)
A 		16
B 13.9
(1.8)
A 		16.3
(3)
A 		4.7
(-3)
A 		4.8
(-2.9)
A 		12
C 22.5
(3)
A 		10.4
(-1.7)
A 		7.1
(-3)
A 		11.3
(-1.4)
A 		15
avr 18.8
(3) 		11
(-0.8) 		8.5
(-2) 		6.5
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11
(2.9)
A 		11.2
(3)
A 		3.7
(-1.8)
A 		1.9
(-3)
A 		5.5
(-0.7)
A 		4
(-1.6)
A 		9
B 22.5
(3)
A 		11.3
(-0.7)
A 		9.5
(-1.3)
A 		11.9
(-0.5)
A 		4.4
(-3)
A 		21
(2.5)
A 		18
C 11.1
(-2.3)
A 		28.5
(3)
A 		11.9
(-2)
A 		10.3
(-2.5)
A 		10.8
(-2.4)
A 		8.7
(-3)
A 		20
avr 14.9
(1.8) 		17
(3) 		8.4
(-2.1) 		8
(-2.3) 		6.9
(-3) 		11.2
(-0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.90
Sequence Type Exemplar sequence
Representative Public ID T28F2.1 NCBI
Target Description T28F2.1 /REP_DB=WormBase Gene ID /WP=CE14351 /TR=O01660 /GB=AAB53053.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058791 NCBI Caenorhabditis elegans T28F2.1 (T28F2.1) mRNA, complete cds. 11/11 None
SNAP00000038904 ENSEMBL cdna:SNAP chromosome:CEL140:I:3637577:3641349:1 11/11 None
GENEFINDER00000038910 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3639650:3641471:1 11/11 None
T28F2.1 ENSEMBL cdna:known chromosome:CEL140:I:3639650:3641471:1 gene:T28F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3639649-3641471(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28F2.1
Entrez Gene 189047 Entrez gene
SwissProt O01660 EMBL-EBI
WormBase CE14351 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53053 Hypothetical protein T28F2.1 [Caenorhabditis elegans] ref|NP_491192.1| T28F2.1 [Caenorhabditis elegans] 0.0
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 1.0E-135
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 1.0E-127
blast AAB53053 Hypothetical protein T28F2.1 [Caenorhabditis elegans] ref|NP_491192.1| T28F2.1 [Caenorhabditis elegans] 1.0E-120
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 1.0E-117
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 1.0E-112
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 4.1E-7
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491192.1 1 17-39
T28F2.1 1 17-39
GENEFINDER00000038910 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:183175_AT
atggttgaatcccccacaagaagaagagaagctattgaaaaagatgatcaggagaaaaga
tgaattccgattcaaaatctgcgtccacatccgccgcggggattttctgacagactccca
acacgctggaactgcttcaaactttacgattcgtgctgtagaccacttgtacactcagca
tcccggattggtatatctgttcagtaatgacccaggttgggttagagagaaaatagctgc
acatcttgactatcagagtgatgttaaagtaatggaaacgtcagaagcaatcaaggattt
atattttgcacagattcattgtgatgctgtgttaattaccgctccttcctcgacatttgg
ctggtggctcggatatttgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTGAATCCCCCACAAGAAGAA 412 49 552 Antisense
CGATTCAAAATCTGCGTCCACATCC 651 247 619 Antisense
CCACATCCGCCGCGGGGATTTTCTG 683 271 636 Antisense
GGGGATTTTCTGACAGACTCCCAAC 446 497 649 Antisense
AACACGCTGGAACTGCTTCAAACTT 22 135 671 Antisense
TGCTTCAAACTTTACGATTCGTGCT 124 579 684 Antisense
GATTCGTGCTGTAGACCACTTGTAC 197 433 699 Antisense
GTACACTCAGCATCCCGGATTGGTA 9 461 720 Antisense
ATAGCTGCACATCTTGACTATCAGA 139 23 784 Antisense
TGATGCTGTGTTAATTACCGCTCCT 206 567 873 Antisense
TGGCTGGTGGCTCGGATATTTGTCA 119 545 909 Antisense
Sequence Source Affymetrix Proprietary Database