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[183174_at] 7TM chemoreceptor, srv family

Description C06E7.7 /REP_DB=WormBase Gene ID /WP=CE03963 /TR=Q17734 /GB=AAA82284.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 02      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 3.7
(-2.9)
A 		2.8
(-3)
A 		5.2
(-2.8)
A 		74.8
(3)
A 		72
B 3
(-3)
A 		8
(3)
A 		7.8
(2.8)
A 		5.7
(0.2)
A 		5
C 6
(-3)
A 		6.3
(-2.9)
A 		9.8
(-2.3)
A 		40.5
(3)
A 		35
avr 4.2
(-3) 		5.7
(-2.8) 		7.6
(-2.4) 		40.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.1
(-3)
A 		3.5
(-2.9)
A 		4.8
(-2.5)
A 		22.6
(3)
A 		5.3
(-2.3)
A 		5.6
(-2.2)
A 		20
B 6.2
(-2)
A 		4.8
(-2.5)
A 		4.2
(-2.7)
A 		7.7
(-1.5)
A 		21
(3)
A 		3.3
(-3)
A 		18
C 5.4
(-3)
A 		12.4
(-1.2)
A 		5.5
(-3)
A 		28.3
(3)
A 		19.6
(0.7)
A 		5.6
(-2.9)
A 		23
avr 4.9
(-3) 		6.9
(-2.1) 		4.8
(-3) 		19.5
(3) 		15.3
(1.3) 		4.8
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-2.6)
A 		0.6
(-3)
A 		1.4
(-2.5)
A 		10.9
(3)
A 		10
B 1
(-3)
A 		2
(3)
A 		1.8
(1.8)
A 		1.2
(-1.8)
A 		1
C 2
(-2.8)
A 		1.8
(-3)
A 		3.4
(-1.1)
A 		6.8
(3)
A 		5
avr 1.4
(-3) 		1.5
(-2.9) 		2.2
(-2) 		6.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(-2.3)
A 		1
(-2.5)
A 		5.7
(3)
A 		1.6
(-1.8)
A 		1.4
(-2.1)
A 		5
B 2.1
(-2.1)
A 		1.6
(-2.5)
A 		1
(-3)
A 		2
(-2.2)
A 		8.5
(3)
A 		1.2
(-2.8)
A 		8
C 2
(-2.3)
A 		3.8
(-0.1)
A 		1.4
(-3)
A 		5.7
(2.2)
A 		6.4
(3)
A 		1.9
(-2.4)
A 		5
avr 1.6
(-2.3) 		2.2
(-1.5) 		1.1
(-3) 		4.5
(1.6) 		5.5
(3) 		1.5
(-2.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183174_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11023
Sequence Type Exemplar sequence
Representative Public ID C06E7.7 NCBI
Target Description C06E7.7 /REP_DB=WormBase Gene ID /WP=CE03963 /TR=Q17734 /GB=AAA82284.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068475 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-17) (srv-17) mRNA, complete cds. 11/11 None
GENEFINDER00000039822 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5864530:5870206:-1 11/11 None
C06E7.7 ENSEMBL cdna:known chromosome:CEL140:IV:5867772:5870157:-1 gene:C06E7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5867777-5869918(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-17
Ensembl C06E7.7
Entrez Gene 182333 Entrez gene
SwissProt Q17734 EMBL-EBI
WormBase CE33361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82284 Serpentine receptor, class v protein 17 [Caenorhabditis elegans] ref|NP_500876.2| Serpentine Receptor, class V family member (srv-17) [Caenorhabditis elegans] 1.0E-166
blast AAA82284 Serpentine receptor, class v protein 17 [Caenorhabditis elegans] ref|NP_500876.2| Serpentine Receptor, class V family member (srv-17) [Caenorhabditis elegans] 1.0E-165
blast AAD12795 Serpentine receptor, class v protein 22 [Caenorhabditis elegans] ref|NP_500881.1| Serpentine Receptor, class V family member (srv-22) [Caenorhabditis elegans] 3.0E-91
blast AAD12792 Serpentine receptor, class v protein 19 [Caenorhabditis elegans] ref|NP_500878.1| Serpentine Receptor, class V family member (srv-19) [Caenorhabditis elegans] 1.0E-90
blast AAD12795 Serpentine receptor, class v protein 22 [Caenorhabditis elegans] ref|NP_500881.1| Serpentine Receptor, class V family member (srv-22) [Caenorhabditis elegans] 2.0E-89
blast AAD12792 Serpentine receptor, class v protein 19 [Caenorhabditis elegans] ref|NP_500878.1| Serpentine Receptor, class V family member (srv-19) [Caenorhabditis elegans] 8.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500876.2 7 5-27,40-62,77-96,131-153,173-195,215-237,257-274
C06E7.7 7 5-27,40-62,77-96,131-153,173-195,215-237,257-274
GENEFINDER00000039822 7 24-46,59-79,94-113,148-170,190-212,232-254,274-291
Sequence
Target Sequence 
>C. ELEGANS:183174_AT
aaccaacattgccacttactcgatttacacaacttttgaaaccgtggaaaattgcatata
tttactggggacctgtggctattttcaattcgatattcctgtcaagtttggaaattggat
ttgattcgcctgaaagaatgattttagttatggacccagatattattagcaaaaccacta
aaataacttttttctttgtggtggcatcgtgtgttacttgtttgacgttgtacggattaa
ttgtgaaatttatcagaatgagaagtcaaacagtttccaaatccctgcaacgagaaattc
gtttggcactccaagtatctctatcatttgcagctgaattaattttactaatctatcttt
cattttcctattattcagccgaaattgaagattccgatctcatcgcgaacacaagaaaat
atttcccacttgcatacggaattttatcttttatcggaccattcacaattctcattttta
acaaagacgtttcgaaacaagttcgatttatgatatctggtaaaaagctggtgggagcaa
cagaatcttcattagtctccacagtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAACATTGCCACTTACTCGATT 509 147 185 Antisense
TACTGGGGACCTGTGGCTATTTTCA 180 645 247 Antisense
AACTTTTTTCTTTGTGGTGGCATCG 511 139 369 Antisense
GTGGCATCGTGTGTTACTTGTTTGA 674 491 385 Antisense
CAAACAGTTTCCAAATCCCTGCAAC 653 191 451 Antisense
GTTTGGCACTCCAAGTATCTCTATC 221 453 485 Antisense
ATCTATCTTTCATTTTCCTATTATT 50 33 535 Antisense
GATTCCGATCTCATCGCGAACACAA 417 433 574 Antisense
GAAAATATTTCCCACTTGCATACGG 267 353 599 Antisense
TTTTATCGGACCATTCACAATTCTC 293 675 633 Antisense
GAATCTTCATTAGTCTCCACAGTAA 399 327 727 Antisense
Sequence Source Affymetrix Proprietary Database