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[183173_at]

Description R09H10.2 /REP_DB=WormBase Gene ID /WP=CE12660 /TR=Q21881 /GB=CAB00871.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 32      4grp_high_8_8 > 27      6grp_total > 21      4grp_total > 37      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 136.6
(-0)
P 		194.6
(3)
P 		90.1
(-2.4)
P 		79.5
(-3)
A 		115
B 108.3
(3)
P 		34.6
(-3)
P 		54
(-1.4)
P 		100.3
(2.3)
A 		74
C 156.2
(2.6)
P 		165.1
(3)
P 		37
(-3)
A 		141.3
(1.9)
P 		128
avr 133.7
(3) 		131.4
(2.8) 		60.4
(-3) 		107
(0.8) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 91
(3)
M 		86.9
(2.4)
P 		82.9
(1.8)
P 		51.7
(-3)
M 		71.5
(0)
M 		60.7
(-1.6)
A 		39
B 91.1
(-1.3)
P 		99.4
(-1)
P 		209.3
(3)
P 		106.7
(-0.8)
P 		96.6
(-1.1)
P 		45.7
(-3)
P 		164
C 96.3
(-0.4)
P 		172.3
(3)
P 		50.1
(-2.5)
P 		84.8
(-1)
M 		39.8
(-3)
P 		62.6
(-2)
A 		133
avr 92.8
(0.5) 		119.5
(3) 		114.1
(2.5) 		81.1
(-0.6) 		69.3
(-1.8) 		56.3
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 49.7
(3)
P 		42.2
(1.8)
P 		23.6
(-1.1)
P 		11.6
(-3)
A 		38
B 34.5
(3)
P 		8.5
(-3)
P 		12.5
(-2.1)
P 		21.4
(-0)
A 		26
C 51.7
(3)
P 		47.5
(2.4)
P 		12.9
(-3)
A 		23.8
(-1.3)
P 		39
avr 45.3
(3) 		32.7
(0.4) 		16.3
(-3) 		18.9
(-2.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 16.8
(-1.8)
M 		30.9
(3)
P 		18.1
(-1.3)
P 		13.1
(-3)
M 		21.6
(-0.1)
M 		14.8
(-2.4)
A 		18
B 31.7
(-0.4)
P 		33.1
(-0.1)
P 		50.8
(3)
P 		28.3
(-1)
P 		39.3
(1)
P 		17
(-3)
P 		34
C 35.7
(0.5)
P 		52.6
(3)
P 		12.8
(-3)
P 		17.1
(-2.4)
M 		12.9
(-3)
P 		20.9
(-1.8)
A 		40
avr 28.1
(-0) 		38.9
(3) 		27.2
(-0.3) 		19.5
(-2.5) 		24.6
(-1) 		17.6
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8458
Sequence Type Exemplar sequence
Representative Public ID R09H10.2 NCBI
Target Description R09H10.2 /REP_DB=WormBase Gene ID /WP=CE12660 /TR=Q21881 /GB=CAB00871.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069560 NCBI Caenorhabditis elegans R09H10.2 (R09H10.2) mRNA, complete cds. 11/11 None
SNAP00000043239 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10605248:10606806:1 11/11 None
GENEFINDER00000043250 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10605248:10608344:1 11/11 None
R09H10.2 ENSEMBL cdna:known chromosome:CEL140:IV:10605248:10606806:1 gene:R09H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10605253-10606812(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09H10.2
Entrez Gene 187756 Entrez gene
SwissProt Q21881 EMBL-EBI
WormBase CE12660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00871 Hypothetical protein R09H10.2 [Caenorhabditis elegans] ref|NP_501961.1| R09H10.2 [Caenorhabditis elegans] 1.0E-163
blast CAB00871 Hypothetical protein R09H10.2 [Caenorhabditis elegans] ref|NP_501961.1| R09H10.2 [Caenorhabditis elegans] 1.0E-158
blast CAE60751 Hypothetical protein CBG04437 [Caenorhabditis briggsae] 1.0E-130
blast CAE60751 Hypothetical protein CBG04437 [Caenorhabditis briggsae] 1.0E-125
blast AAB66023 Hypothetical protein C17A2.7 [Caenorhabditis elegans] ref|NP_494668.1| C17A2.7 [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.5E-50
Pfam IPR000895 EMBL-EBI Transthyretin 1.4E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501961.1 1 7-24
R09H10.2 1 7-24
SNAP00000043239 1 7-24
GENEFINDER00000043250 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:183173_AT
gtgattatccgaattctgacgagacaaaacgacatattgttccaaaaatggaattgccaa
gtgtcataatcacactgggaattggacatgatacaggagcagaggagaaactaaagaaag
gactgaaacacggatccgaattttttggagcagaccctatgcatgaaattaatgaagacc
tgttcaccaaactcggcggaaaatattttccatttgcagttggagctacccctggtcttg
cagaagctagtgttttaatcaattccacctacactactaaaacggtagtcaacgtggaca
ttatatacttcttgaagaaattggtgaatagaacttttatcgatgacatttggattgacg
gagaaggtgcggaatacggattgtttgatcatttctacaatggtggagcttttgatcaaa
atggaataactttctgtcaatttaacatcgagattcacctgccagataacctacagaaga
aacttttccacgatttcatttttcaattgttgaaagacaagcgatatgccatttataggc
cagtacaaggaagtcatatgcgcctatttatgctcaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATTATCCGAATTCTGACGAGAC 109 485 278 Antisense
TTTTGGAGCAGACCCTATGCATGAA 203 679 420 Antisense
ATGAAGACCTGTTCACCAAACTCGG 558 43 449 Antisense
CTACCCCTGGTCTTGCAGAAGCTAG 663 225 503 Antisense
TAATCAATTCCACCTACACTACTAA 667 633 533 Antisense
GTCAACGTGGACATTATATACTTCT 159 463 565 Antisense
GGTGCGGAATACGGATTGTTTGATC 87 501 643 Antisense
TTAACATCGAGATTCACCTGCCAGA 147 685 719 Antisense
GATTCACCTGCCAGATAACCTACAG 624 429 729 Antisense
TTTTCCACGATTTCATTTTTCAATT 483 677 761 Antisense
ATATGCGCCTATTTATGCTCAACTA 284 21 833 Antisense
Sequence Source Affymetrix Proprietary Database