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[183172_s_at]

Description T16G1.11 /REP_DB=WormBase Gene ID /WP=CE20081 /TR=Q9XUP3 /GB=CAB04732.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 56      6grp_total > 33      4grp_total > 59      6grp_cgc > 71      6grp_cgc_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2560
1 2 3 4 range
A 2800.4
(0.3)
P 		3632.1
(2.3)
P 		3949.2
(3)
P 		1388.8
(-3)
P 		2560
B 2768.7
(0.4)
P 		3267.4
(1.8)
P 		3697.6
(3)
P 		1589.1
(-3)
P 		2109
C 2528
(-0.5)
P 		2707.8
(0)
P 		3787.4
(3)
P 		1616.8
(-3)
P 		2171
avr 2699
(0.1) 		3202.4
(1.4) 		3811.4
(3) 		1531.6
(-3) 		2280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 677
1 2 3 4 5 6 range
A 2093
(-0.6)
P 		2443.4
(3)
P 		2222.6
(0.7)
P 		2167
(0.2)
P 		1866.2
(-2.9)
P 		1857.4
(-3)
P 		586
B 2282
(1.6)
P 		2067.3
(-0.3)
P 		2438.5
(3)
P 		1983.1
(-1.1)
P 		1766.6
(-3)
P 		1893.2
(-1.9)
P 		672
C 2334.7
(2)
P 		2076.6
(-3)
P 		2383.3
(3)
P 		2235.5
(0.1)
P 		2095.5
(-2.6)
P 		2141.2
(-1.7)
P 		307
avr 2236.6
(1.5) 		2195.8
(0.9) 		2348.1
(3) 		2128.5
(-0) 		1909.4
(-3) 		1963.9
(-2.3) 		439
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1117
1 2 3 4 range
A 1019.6
(2.9)
P 		788.4
(1.2)
P 		1032.4
(3)
P 		203.3
(-3)
P 		829
B 882.9
(3)
P 		807
(2.2)
P 		856.8
(2.7)
P 		338.6
(-3)
P 		544
C 836.8
(0.2)
P 		778.5
(-0.1)
P 		1320
(3)
P 		272.6
(-3)
P 		1047
avr 913.1
(1.8) 		791.3
(0.9) 		1069.7
(3) 		271.5
(-3) 		798

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 385.8
(-3)
P 		869
(3)
P 		484
(-1.8)
P 		549.6
(-1)
P 		563.1
(-0.8)
P 		452.2
(-2.2)
P 		483
B 794
(3)
P 		688.1
(0.6)
P 		592.1
(-1.5)
P 		525.2
(-3)
P 		717.7
(1.3)
P 		706
(1)
P 		269
C 865.4
(3)
P 		633.6
(-0.3)
P 		606.6
(-0.7)
P 		449.6
(-3)
P 		678.1
(0.3)
P 		716.8
(0.9)
P 		416
avr 681.7
(1.7) 		730.2
(3) 		560.9
(-1.6) 		508.1
(-3) 		653
(0.9) 		625
(0.2) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183172_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13420
Sequence Type Exemplar sequence
Representative Public ID T16G1.11 NCBI
Target Description T16G1.11 /REP_DB=WormBase Gene ID /WP=CE20081 /TR=Q9XUP3 /GB=CAB04732.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073840 NCBI Caenorhabditis elegans Eukaryotic Initiation Factor family member (eif-3.K) (eif-3.K) mRNA, complete cds. 11/11 None
SNAP00000020375 ENSEMBL cdna:SNAP chromosome:CEL140:V:12956592:12957565:1 11/11 None
GENEFINDER00000020378 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12956592:12957701:1 11/11 None
T16G1.11 ENSEMBL cdna:known chromosome:CEL140:V:12956592:12957804:1 gene:T16G1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12956591-12957701(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol eif-3.K
Ensembl T16G1.11
Entrez Gene 179779 Entrez gene
SwissProt Q9XUP3 EMBL-EBI
WormBase CE20081 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18285_AT eukaryotic translation initiation factor 3 subunit 11 / eIF-3 p25 / eIF3k (TIF3K1) at
ATH1-121501:253336_AT eukaryotic translation initiation factor 3 subunit 11 / eIF-3 p25 / eIF3k (TIF3K1) at
CANINE:1586729_S_AT similar to eukaryotic translation initiation factor 3, subunit 12 cfa
CANINE_2:CFA.3229.1.S1_S_AT similar to eukaryotic translation initiation factor 3, subunit 12 cfa
DROSOPHILA_2:1635342_AT dm
DROSGENOME1:153503_AT dm
HG-FOCUS:221494_X_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133A:221494_X_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133_PLUS_2:221494_X_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133A_2:221494_X_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133_PLUS_2:210501_X_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133A_2:210501_X_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133A:210501_X_AT eukaryotic translation initiation factor 3, subunit 12 hs
HU35KSUBA:AA096094_S_AT eukaryotic translation initiation factor 3, subunit 12 hs
HU35KSUBC:RC_AA031621_AT eukaryotic translation initiation factor 3, subunit 12 hs
U133_X3P:G5114050_3P_S_AT eukaryotic translation initiation factor 3, subunit 12 hs
U133_X3P:G5114050_3P_AT eukaryotic translation initiation factor 3, subunit 12 hs
U133_X3P:HS.324925.2.A1_3P_S_AT eukaryotic translation initiation factor 3, subunit 12 hs
U133_X3P:HS.143773.0.A1_3P_AT eukaryotic translation initiation factor 3, subunit 12 hs
U133_X3P:221494_3P_X_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133A_2:212716_S_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-FOCUS:212716_S_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133_PLUS_2:212716_S_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133A:212716_S_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133_PLUS_2:236605_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U133B:236605_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U95AV2:31492_AT eukaryotic translation initiation factor 3, subunit 12 hs
HG-U95C:61067_R_AT eukaryotic translation initiation factor 3, subunit 12 hs
MU11KSUBA:C78967_RC_S_AT eukaryotic translation initiation factor 3, subunit 12 mm
MG-U74AV2:95715_AT eukaryotic translation initiation factor 3, subunit 12 mm
MOE430A:1452674_A_AT eukaryotic translation initiation factor 3, subunit 12 mm
MOUSE430A_2:1452674_A_AT eukaryotic translation initiation factor 3, subunit 12 mm
MOUSE430_2:1452674_A_AT eukaryotic translation initiation factor 3, subunit 12 mm
RG-U34B:RC_AI013900_AT eukaryotic translation initiation factor 3 subunit k (predicted) rn
RAE230A:1372735_AT eukaryotic translation initiation factor 3 subunit k (predicted) rn
RAT230_2:1372735_AT eukaryotic translation initiation factor 3 subunit k (predicted) rn
RAE230B:1381339_AT eukaryotic translation initiation factor 3 subunit k (predicted) rn
RAT230_2:1381339_AT eukaryotic translation initiation factor 3 subunit k (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB04732 Hypothetical protein T16G1.11 [Caenorhabditis elegans] ref|NP_506241.1| Eukaryotic Initiation Factor family member (eif-3.K) [Caenorhabditis elegans] sp|Q9XUP3|IF3C_CAEEL Probable eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) 1.0E-134
blast CAB04732 Hypothetical protein T16G1.11 [Caenorhabditis elegans] ref|NP_506241.1| Eukaryotic Initiation Factor family member (eif-3.K) [Caenorhabditis elegans] sp|Q9XUP3|IF3C_CAEEL Probable eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) 1.0E-126
blast Q61K76 Probable eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) emb|CAE64709.1| Hypothetical protein CBG09495 [Caenorhabditis briggsae] 1.0E-120
blast Q61K76 Probable eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) emb|CAE64709.1| Hypothetical protein CBG09495 [Caenorhabditis briggsae] 1.0E-114
blast AAD40193 HSPC029 [Homo sapiens] 9.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR009374 EMBL-EBI Eukaryotic translation initiation factor 3 subunit 11 1.0E-126
Pfam IPR009374 EMBL-EBI Eukaryotic translation initiation factor 3 subunit 11 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183172_S_AT
gttttgaccattctcaagctctaccagcttaacccggagaagtacgacgaggctgttgtt
cgacaagttttgctcaagacgttgatggttttgccatcgagtgatttcgctctcgccaag
tgtctcatcgacaccaacagactcggatctcaagaacttcgcagaatctttgatcttgga
gctgtgctcgaatcttgcaacttcgctgttttctggaaattggtgaagggggcgtataaa
ccaacaacgaacccaaatgaacccttcaaagttcctggcgaagtcccaaaaatgatcaag
ccaatggtcggattcgaggatgctgtcaagcactatgcttgtcgcgtcatcagtgttacg
ttccaaaaaatcgaaaagaaaatgttgagccgtcttctcggcggagccagtgacaaggaa
gttaccgcactggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGACCATTCTCAAGCTCTACC 700 447 148 Antisense
CTCTACCAGCTTAACCCGGAGAAGT 16 231 166 Antisense
TTTGCCATCGAGTGATTTCGCTCTC 17 669 237 Antisense
GACTCGGATCTCAAGAACTTCGCAG 72 375 287 Antisense
GGAGCTGTGCTCGAATCTTGCAACT 20 523 325 Antisense
AATCTTGCAACTTCGCTGTTTTCTG 143 171 338 Antisense
GAACCCTTCAAAGTTCCTGGCGAAG 446 145 406 Antisense
GTCGGATTCGAGGATGCTGTCAAGC 519 471 454 Antisense
GTCGCGTCATCAGTGTTACGTTCCA 397 475 488 Antisense
TCTTCTCGGCGGAGCCAGTGACAAG 513 615 540 Antisense
GACAAGGAAGTTACCGCACTGGCAC 698 363 559 Antisense
Sequence Source Affymetrix Proprietary Database