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[183171_at]

Description C46F9.3 /REP_DB=WormBase Gene ID /WP=CE08770 /TR=O17190 /GB=AAB70958.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 72      6grp_total > 73      4grp_total > 09      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 56
(-2.4)
A 		40.3
(-3)
A 		70.7
(-1.8)
P 		188.3
(3)
P 		148
B 58.9
(-3)
P 		84.7
(-2.1)
A 		102.6
(-1.5)
P 		238.7
(3)
P 		180
C 63.4
(-3)
P 		74.9
(-2.6)
A 		69.6
(-2.8)
A 		231.5
(3)
P 		168
avr 59.4
(-3) 		66.6
(-2.7) 		81
(-2.2) 		219.5
(3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 84.5
(-3)
A 		98
(-2.3)
P 		204.9
(3)
P 		199.5
(2.7)
P 		161.8
(0.9)
P 		117
(-1.4)
P 		120
B 60.9
(-3)
P 		127.6
(-0)
P 		195.2
(3)
P 		158.1
(1.3)
P 		117.8
(-0.5)
P 		102.4
(-1.1)
P 		134
C 46.7
(-3)
A 		132.8
(0.4)
P 		98.6
(-0.9)
P 		197.5
(3)
P 		131.8
(0.4)
P 		152.5
(1.2)
P 		151
avr 64
(-3) 		119.5
(-0.2) 		166.2
(2.1) 		185
(3) 		137.1
(0.6) 		124
(-0) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 20.4
(0.7)
A 		8.7
(-3)
A 		18.5
(0.1)
P 		27.6
(3)
P 		19
B 18.8
(-3)
P 		20.9
(-2.6)
A 		23.8
(-2.1)
P 		50.9
(3)
P 		32
C 21
(-3)
P 		21.5
(-2.8)
A 		24.3
(-1.9)
A 		39
(3)
P 		18
avr 20.1
(-2.2) 		17
(-3) 		22.2
(-1.6) 		39.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 15.6
(-3)
A 		34.9
(0.3)
P 		44.6
(2)
P 		50.6
(3)
P 		48.8
(2.7)
P 		28.5
(-0.8)
P 		35
B 21.2
(-3)
P 		42.5
(1.8)
P 		47.4
(2.9)
P 		41.9
(1.7)
P 		47.9
(3)
P 		38.2
(0.8)
P 		27
C 17.3
(-3)
A 		40.5
(1.1)
P 		25.1
(-1.6)
P 		39.7
(1)
P 		42.7
(1.5)
P 		51.1
(3)
P 		34
avr 18
(-3) 		39.3
(1.5) 		39
(1.4) 		44.1
(2.5) 		46.5
(3) 		39.3
(1.5) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4144
Sequence Type Exemplar sequence
Representative Public ID C46F9.3 NCBI
Target Description C46F9.3 /REP_DB=WormBase Gene ID /WP=CE08770 /TR=O17190 /GB=AAB70958.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061715 NCBI Caenorhabditis elegans C46F9.3 (C46F9.3) mRNA, complete cds. 11/11 None
SNAP00000005798 ENSEMBL cdna:SNAP chromosome:CEL140:II:1900245:1901923:1 11/11 None
GENEFINDER00000005804 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1900245:1901923:1 11/11 None
C46F9.3 ENSEMBL cdna:known chromosome:CEL140:II:1900245:1901923:1 gene:C46F9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1900243-1901922(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46F9.3
Entrez Gene 183515 Entrez gene
SwissProt O17190 EMBL-EBI
WormBase CE08770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 0.0
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 0.0
blast AAC26265 Hypothetical protein C40D2.2 [Caenorhabditis elegans] ref|NP_494146.1| C40D2.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.3E-39
Pfam IPR002083 EMBL-EBI MATH 1.1E-36
Pfam IPR002083 EMBL-EBI MATH 9.1E-53
Sequence
Target Sequence 
>C. ELEGANS:183171_AT
gggaagtttattagttggagcgatctggagaaagattatgtgaacaatgacagtatatat
atggaaattcgtgttaaaataatcaaaatcacagatgaaccatgcaatattgcaaacacg
gaaagagcatttgttctatctcatactgtcaggaacatgtcaagtattaaagaaggaggg
gactaccttacggacattcaaactcgttttaacattccatggaaattaaaaattcaaaga
ctaaatggattcatagaattatttcttcgatgtgcagaaaatatgtgtgaatccagaaaa
tggtcaattgaaacggaatatcaattgaaattggtgtcaactaatgggagaagtttatcg
ttaaaaaatataaaatatgtgtttgataaaccattcggttacggatggcttacgctcctg
agatgggacagtttagaggaaaaatacatagtaaatgacactctcattattgaagctcac
gtgaagattctaaatatgactggaattgtggatgaagcttctgttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAGTTTATTAGTTGGAGCGATC 688 493 730 Antisense
TTAGTTGGAGCGATCTGGAGAAAGA 206 679 740 Antisense
AAAATCACAGATGAACCATGCAATA 365 133 814 Antisense
GCATTTGTTCTATCTCATACTGTCA 241 309 856 Antisense
ATCTCATACTGTCAGGAACATGTCA 195 29 867 Antisense
TAGAATTATTTCTTCGATGTGCAGA 433 651 983 Antisense
AATTGGTGTCAACTAATGGGAGAAG 294 171 1058 Antisense
TTACGGATGGCTTACGCTCCTGAGA 708 681 1128 Antisense
GGCTTACGCTCCTGAGATGGGACAG 647 537 1136 Antisense
GACACTCTCATTATTGAAGCTCACG 435 367 1186 Antisense
GAATTGTGGATGAAGCTTCTGTTGA 260 323 1232 Antisense
Sequence Source Affymetrix Proprietary Database