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[183170_at] 7TM chemoreceptor, srab family

Description C33G8.5 /REP_DB=WormBase Gene ID /WP=CE06914 /TR=Q18398 /GB=AAC25846.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      6grp_total > 03      4grp_total > 22      6grp_cgc > 51      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 161.7
(2.6)
P 		53.1
(-2.6)
A 		44.5
(-3)
A 		170.7
(3)
M 		126
B 167.3
(3)
P 		68.1
(-2.9)
A 		66.5
(-3)
A 		83.4
(-2)
A 		101
C 134
(-0.1)
P 		58.8
(-2.9)
A 		55.8
(-3)
A 		219.9
(3)
P 		164
avr 154.3
(2.8) 		60
(-2.7) 		55.6
(-3) 		158
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 152.9
(3)
P 		95.1
(0.2)
P 		136.2
(2.2)
P 		93.9
(0.2)
P 		144.9
(2.6)
P 		27.7
(-3)
A 		125
B 146.7
(3)
P 		103
(0.5)
P 		85.5
(-0.4)
P 		122.4
(1.6)
P 		114
(1.2)
P 		39.7
(-3)
P 		107
C 110.1
(0)
P 		172.5
(3)
P 		120.4
(0.5)
P 		111.7
(0.1)
A 		72.6
(-1.8)
P 		47.1
(-3)
A 		125
avr 136.6
(3) 		123.5
(2.2) 		114
(1.6) 		109.3
(1.3) 		110.5
(1.4) 		38.2
(-3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 58.9
(3)
P 		11.5
(-3)
A 		11.6
(-3)
A 		25
(-1.3)
M 		47
B 53.3
(3)
P 		16.8
(-2.8)
A 		15.4
(-3)
A 		17.8
(-2.6)
A 		38
C 44.4
(3)
P 		16.9
(-3)
A 		19.4
(-2.5)
A 		37.1
(1.4)
P 		28
avr 52.2
(3) 		15.1
(-3) 		15.5
(-2.9) 		26.6
(-1.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 28.2
(0.5)
P 		33.8
(1.4)
P 		29.7
(0.7)
P 		23.8
(-0.2)
P 		43.7
(3)
P 		6.7
(-3)
A 		37
B 51
(3)
P 		34.3
(0.2)
P 		20.8
(-2)
P 		32.4
(-0.1)
P 		46.3
(2.2)
P 		14.8
(-3)
P 		36
C 40.8
(1.1)
P 		52.6
(3)
P 		30.6
(-0.6)
P 		22.5
(-1.9)
A 		23.5
(-1.7)
P 		15.8
(-3)
A 		37
avr 40
(3) 		40.2
(3) 		27
(0.2) 		26.2
(-0) 		37.8
(2.5) 		12.4
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11482
Sequence Type Exemplar sequence
Representative Public ID C33G8.5 NCBI
Target Description C33G8.5 /REP_DB=WormBase Gene ID /WP=CE06914 /TR=Q18398 /GB=AAC25846.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072371 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-4) (srab-4) mRNA, complete cds. 11/11 None
SNAP00000000533 ENSEMBL cdna:SNAP chromosome:CEL140:V:7006744:7008360:1 11/11 None
GENEFINDER00000000539 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7006744:7008360:1 11/11 None
C33G8.5 ENSEMBL cdna:known chromosome:CEL140:V:7006743:7008418:1 gene:C33G8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7006744-7008361(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-4
Ensembl C33G8.5
Entrez Gene 183177 Entrez gene
SwissProt Q18398 EMBL-EBI
WormBase CE06914 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25846 Hypothetical protein C33G8.5 [Caenorhabditis elegans] ref|NP_504772.1| Serpentine Receptor, class AB (class A-like) family member (srab-4) [Caenorhabditis elegans] 1.0E-166
blast CAE71987 Hypothetical protein CBG19062 [Caenorhabditis briggsae] 1.0E-144
blast AAK70658 Serpentine receptor, class ab (class a-like) protein 23 [Caenorhabditis elegans] ref|NP_503555.2| Serpentine Receptor, class AB (class A-like) family member (srab-23) [Caenorhabditis elegans] 1.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504772.1 6 13-35,101-123,136-158,183-205,236-258,273-295
C33G8.5 6 13-35,101-123,136-158,183-205,236-258,273-295
SNAP00000000533 6 13-35,101-123,136-158,183-205,236-258,273-295
GENEFINDER00000000539 6 13-35,101-123,136-158,183-205,236-258,273-295
Sequence
Target Sequence 
>C. ELEGANS:183170_AT
tagcacttcactataactcgacttatgaaatgtgtggaagaggattcggtgttcttctag
gatttcttcaacttttcctcgcatttgcattcttgtttaaactctactttgatgcctcat
ttacaccagtcccaaatgttactctttattattgtcagactctagcttccggtcacggat
ccgtctggacaattaatgctccactatatgcagttatgattgctcagtgtgtatgtagat
tggcgttttggtacatcggagtgcaaactaaaaggaagagaaacacccagaaactacaaa
cactgagcactcggtatactttggagcaaggaattcgatctataaaagcactgaatatgt
tcattaacgccaattgtttcgtatttttctttttctcgtttattggaacttcattacatt
ttaattcgagtaaaatgagcagaccaacgtactttgctctcgtggaagtgattcatttta
ttccaacttatggaattctactttcaatttacatttatttttctttgaaaaagcttgact
caaagcaaaagacatcactcacaaaaagcatgcagatggatccgagtcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCACTTCACTATAACTCGACTTA 541 649 377 Antisense
GAGGATTCGGTGTTCTTCTAGGATT 94 403 416 Antisense
TTTTCCTCGCATTTGCATTCTTGTT 459 677 449 Antisense
CTTTGATGCCTCATTTACACCAGTC 455 223 483 Antisense
ACACCAGTCCCAAATGTTACTCTTT 657 109 499 Antisense
TATTGTCAGACTCTAGCTTCCGGTC 456 663 526 Antisense
GTCACGGATCCGTCTGGACAATTAA 595 463 548 Antisense
TGGCGTTTTGGTACATCGGAGTGCA 463 543 617 Antisense
CACTGAGCACTCGGTATACTTTGGA 117 199 677 Antisense
AGCAGACCAACGTACTTTGCTCTCG 286 77 814 Antisense
AGCATGCAGATGGATCCGAGTCGTT 182 79 943 Antisense
Sequence Source Affymetrix Proprietary Database