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[183169_s_at]

Description K06C4.1 /REP_DB=WormBase Gene ID /WP=CE11806 /TR=Q9GYH4 /GB=AAF98224.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 17.7
(-0.3)
A 		34.9
(3)
A 		4
(-3)
A 		33.5
(2.7)
A 		31
B 10.5
(3)
A 		1.5
(-2.6)
A 		0.8
(-3)
A 		2.2
(-2.1)
A 		10
C 4.3
(3)
A 		4.3
(3)
A 		1
(-3)
A 		2.3
(-0.6)
A 		3
avr 10.8
(1.6) 		13.6
(3) 		1.9
(-3) 		12.7
(2.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.6
(1.5)
A 		0.5
(-3)
A 		0.8
(-2.4)
A 		3.3
(3)
A 		2.5
(1.3)
A 		2.4
(1.1)
A 		3
B 2.5
(3)
A 		0.7
(-1.9)
A 		0.3
(-3)
A 		1.2
(-0.5)
A 		2.2
(2.2)
A 		2.2
(2.2)
A 		2
C 3
(0.4)
A 		3.2
(0.7)
A 		0.9
(-2.7)
A 		4.8
(3)
A 		0.7
(-3)
A 		2
(-1.1)
A 		4
avr 2.7
(2) 		1.5
(-1) 		0.7
(-3) 		3.1
(3) 		1.8
(-0.3) 		2.2
(0.8) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.4
(1.9)
A 		7.6
(3)
A 		1.1
(-3)
A 		4.9
(0.5)
A 		7
B 3.3
(3)
A 		0.4
(-2.6)
A 		0.2
(-3)
A 		0.5
(-2.4)
A 		3
C 1.4
(3)
A 		1.2
(1.8)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1
avr 3.7
(3) 		3.1
(1.8) 		0.6
(-3) 		1.9
(-0.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-0)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.8
(3)
A 		0.8
(3)
A 		0.6
(1)
A 		1
B 0.9
(3)
A 		0.2
(-2.3)
A 		0.1
(-3)
A 		0.3
(-1.5)
A 		0.9
(3)
A 		0.8
(2.3)
A 		1
C 1.1
(3)
A 		1
(2.3)
A 		0.2
(-3)
A 		1
(2.3)
A 		0.2
(-3)
A 		0.7
(0.3)
A 		1
avr 0.8
(3) 		0.5
(-0) 		0.2
(-3) 		0.7
(2) 		0.6
(1) 		0.7
(2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183169_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12018
Sequence Type Exemplar sequence
Representative Public ID K06C4.1 NCBI
Target Description K06C4.1 /REP_DB=WormBase Gene ID /WP=CE11806 /TR=Q9GYH4 /GB=AAF98224.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072873(11), NM_072889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072873 NCBI Caenorhabditis elegans F07B7.8 (F07B7.8) mRNA, complete cds. 11/11 A 
NM_072889 NCBI Caenorhabditis elegans K06C4.1 (K06C4.1) mRNA, complete cds. 11/11 A 
SNAP00000015090 ENSEMBL cdna:SNAP chromosome:CEL140:V:8847755:8849202:-1 11/11 None
SNAP00000018181 ENSEMBL cdna:SNAP chromosome:CEL140:V:8889850:8891297:-1 11/11 None
F07B7.8 ENSEMBL cdna:known chromosome:CEL140:V:8847880:8849358:-1 gene:F07B7.8 11/11 A 
K06C4.1 ENSEMBL cdna:known chromosome:CEL140:V:8889988:8891453:-1 gene:K06C4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8889988-8891454(-) 99.25 100.0
chrV:8847893-8849359(-) 99.25 100.0
Public Domain and Genome References
Gene Title

Ensembl F07B7.8
K06C4.1
Entrez Gene 184116 Entrez gene
187063 Entrez gene
SwissProt Q965Z0 EMBL-EBI
Q9GYH4 EMBL-EBI
WormBase CE26803 Wormbase
CE11806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-138
blast AAF98224 Hypothetical protein K06C4.1 [Caenorhabditis elegans] ref|NP_505290.1| K06C4.1 [Caenorhabditis elegans] 1.0E-136
blast AAF98224 Hypothetical protein K06C4.1 [Caenorhabditis elegans] ref|NP_505290.1| K06C4.1 [Caenorhabditis elegans] 1.0E-133
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-133
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.3E-12
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.7E-24
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.8E-9
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.7E-24
Sequence
Target Sequence 
>C. ELEGANS:183169_S_AT
aattgccaaatctgttaacttaccagagagagaaattgtggatggaataaacaagctttg
taaaggtgttcatacttgtgagcatttaaaatgtgaggcaaaagaagaagttagagatta
tgtggataaagtaacctcgtattgtgaagctattcagtatctcactattgatttcaaaag
ttgtgaatctcaattaaccgtggcaaattcgacatgttttcaaaactttgatccattccc
agatgcagttgacgatccggcagaaatggaagaaattcaaaacgaagcatgcgctaactt
ttttggtaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCCAAATCTGTTAACTTACCA 621 169 444 Antisense
GTGGATGGAATAAACAAGCTTTGTA 247 489 481 Antisense
AAGCTTTGTAAAGGTGTTCATACTT 598 147 496 Antisense
AGGTGTTCATACTTGTGAGCATTTA 608 57 507 Antisense
TGTGAATCTCAATTAACCGTGGCAA 391 555 625 Antisense
ACCGTGGCAAATTCGACATGTTTTC 321 89 640 Antisense
TTCAAAACTTTGATCCATTCCCAGA 523 683 662 Antisense
GATCCATTCCCAGATGCAGTTGACG 70 417 673 Antisense
GCAGTTGACGATCCGGCAGAAATGG 34 313 688 Antisense
AAAACGAAGCATGCGCTAACTTTTT 108 129 722 Antisense
AGCATGCGCTAACTTTTTTGGTAAA 178 77 729 Antisense
Sequence Source Affymetrix Proprietary Database