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[183168_at]

Description K06C4.1 /REP_DB=WormBase Gene ID /WP=CE11806 /TR=Q9GYH4 /GB=AAF98224.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      6grp_highest_nonorm > 90      6grp_total > 70      4grp_total > 39      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 197.9
(3)
P 		43.7
(-2.2)
A 		20.3
(-3)
A 		52
(-1.9)
P 		178
B 133.4
(3)
P 		5.3
(-3)
A 		19.8
(-2.3)
A 		61.1
(-0.4)
P 		128
C 245.7
(3)
P 		14.8
(-3)
A 		17.7
(-2.9)
A 		76.7
(-1.4)
P 		231
avr 192.3
(3) 		21.3
(-2.9) 		19.3
(-3) 		63.3
(-1.5) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 145.9
(-0)
P 		79.1
(-3)
P 		214.7
(3)
P 		208.8
(2.7)
P 		118.5
(-1.3)
P 		114.3
(-1.4)
P 		136
B 148.7
(0.2)
P 		75.7
(-3)
P 		210.8
(3)
P 		193.1
(2.2)
P 		158
(0.7)
P 		134.1
(-0.4)
P 		135
C 141.7
(0.8)
P 		55.1
(-3)
P 		98.9
(-1.1)
P 		191.5
(3)
P 		175.5
(2.3)
P 		151.5
(1.2)
P 		136
avr 145.4
(0.5) 		70
(-3) 		174.8
(1.9) 		197.8
(3) 		150.7
(0.8) 		133.3
(-0) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 72.1
(3)
P 		9.5
(-2.6)
A 		5.3
(-3)
A 		7.6
(-2.8)
P 		67
B 42.5
(3)
P 		1.3
(-3)
A 		4.6
(-2.5)
A 		13
(-1.3)
P 		41
C 81.3
(3)
P 		4.3
(-3)
A 		6.2
(-2.9)
A 		12.9
(-2.3)
P 		77
avr 65.3
(3) 		5
(-3) 		5.4
(-3) 		11.2
(-2.4) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 26.9
(-3)
P 		28.1
(-2.7)
P 		46.8
(1.6)
P 		53
(3)
P 		35.8
(-1)
P 		27.8
(-2.8)
P 		26
B 51.8
(1.1)
P 		25.2
(-3)
P 		51.2
(1)
P 		51.1
(1)
P 		64.2
(3)
P 		50
(0.8)
P 		39
C 52.5
(2.4)
P 		16.8
(-3)
P 		25.2
(-1.7)
P 		38.5
(0.3)
P 		56.8
(3)
P 		50.7
(2.1)
P 		40
avr 43.7
(1.2) 		23.4
(-3) 		41.1
(0.7) 		47.5
(2) 		52.3
(3) 		42.8
(1) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12018
Sequence Type Exemplar sequence
Representative Public ID K06C4.1 NCBI
Target Description K06C4.1 /REP_DB=WormBase Gene ID /WP=CE11806 /TR=Q9GYH4 /GB=AAF98224.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072873(11), NM_072889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072873 NCBI Caenorhabditis elegans F07B7.8 (F07B7.8) mRNA, complete cds. 11/11 A 
NM_072889 NCBI Caenorhabditis elegans K06C4.1 (K06C4.1) mRNA, complete cds. 11/11 A 
SNAP00000015090 ENSEMBL cdna:SNAP chromosome:CEL140:V:8847755:8849202:-1 11/11 None
GENEFINDER00000015154 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8848790:8849422:-1 9/11 None
SNAP00000018181 ENSEMBL cdna:SNAP chromosome:CEL140:V:8889850:8891297:-1 11/11 None
GENEFINDER00000018203 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8890885:8891517:-1 9/11 None
F07B7.8 ENSEMBL cdna:known chromosome:CEL140:V:8847880:8849358:-1 gene:F07B7.8 11/11 A 
K06C4.1 ENSEMBL cdna:known chromosome:CEL140:V:8889988:8891453:-1 gene:K06C4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8889988-8891454(-) 99.25 100.0
chrV:8847893-8849359(-) 99.25 100.0
Public Domain and Genome References
Gene Title

Ensembl F07B7.8
K06C4.1
Entrez Gene 184116 Entrez gene
187063 Entrez gene
SwissProt Q965Z0 EMBL-EBI
Q9GYH4 EMBL-EBI
WormBase CE26803 Wormbase
CE11806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-138
blast AAF98224 Hypothetical protein K06C4.1 [Caenorhabditis elegans] ref|NP_505290.1| K06C4.1 [Caenorhabditis elegans] 1.0E-136
blast AAF98224 Hypothetical protein K06C4.1 [Caenorhabditis elegans] ref|NP_505290.1| K06C4.1 [Caenorhabditis elegans] 1.0E-133
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-133
blast AAK84517 Hypothetical protein F07B7.8 [Caenorhabditis elegans] ref|NP_505274.1| F07B7.8 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.3E-12
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.7E-24
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.8E-9
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.7E-24
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.1E-12
Sequence
Target Sequence 
>C. ELEGANS:183168_AT
atttcctactgtgacgctaatcattttctctcagtagatttcaaagaatgcgaggcaaaa
ctaatggcggataactcaacgtgcattcaagactggattccatttccagatccaattagc
gattcattgaaaatcgatgaaaaattaatggaatcatgcaagattttcctaggacaagat
aattgcattgagaagaagatgattgagatttgtgatactgccatgtggatacaatttata
aagaaacttcatgacatttttgaaattgccaaatctgttaacttaccagagagagaaatt
gtggatggaataaacaagctttgtaaaggtgttcatacttgtgagcatttaaaatgtgag
gcaaaagaagaagttagagattatgtggataaagtaacctcgtattgtgaagctattcag
tatctcactattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCTACTGTGACGCTAATCATT 355 17 181 Antisense
GTGACGCTAATCATTTTCTCTCAGT 341 483 191 Antisense
ATCATTTTCTCTCAGTAGATTTCAA 361 31 200 Antisense
TGCGAGGCAAAACTAATGGCGGATA 407 581 229 Antisense
GGCGGATAACTCAACGTGCATTCAA 145 497 246 Antisense
GTGCATTCAAGACTGGATTCCATTT 610 479 261 Antisense
GATTCCATTTCCAGATCCAATTAGC 289 433 276 Antisense
ATCATGCAAGATTTTCCTAGGACAA 253 29 333 Antisense
GAGATTTGTGATACTGCCATGTGGA 304 397 385 Antisense
GTGGATAAAGTAACCTCGTATTGTG 129 491 565 Antisense
GAAGCTATTCAGTATCTCACTATTG 359 341 589 Antisense
Sequence Source Affymetrix Proprietary Database