[Home] | [Total List]

[183167_at]

Description C10A4.5 /REP_DB=WormBase Gene ID /WP=CE02473 /TR=Q17889 /GB=AAC46519.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 117.9
(1.5)
P 		49.5
(-3)
A 		84.3
(-0.7)
A 		140.8
(3)
P 		91
B 74.8
(-2.8)
P 		70.3
(-3)
A 		100.6
(-1.3)
A 		178.8
(3)
P 		109
C 99.7
(-0.3)
P 		58.4
(-2.8)
A 		55.9
(-3)
M 		151.6
(3)
P 		96
avr 97.5
(-0.7) 		59.4
(-3) 		80.3
(-1.7) 		157.1
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 61.2
(-3)
P 		61.2
(-3)
A 		84.5
(-0.6)
A 		118.8
(3)
P 		104.4
(1.5)
P 		104.9
(1.6)
P 		58
B 62.1
(-3)
P 		91
(3)
A 		65.9
(-2.2)
A 		69.9
(-1.4)
A 		71.5
(-1)
A 		80
(0.7)
P 		29
C 85.8
(-0.4)
P 		66.5
(-3)
A 		82.4
(-0.8)
P 		110.5
(3)
P 		103.2
(2)
P 		67.3
(-2.9)
P 		44
avr 69.7
(-3) 		72.9
(-2.4) 		77.6
(-1.4) 		99.7
(3) 		93
(1.7) 		84.1
(-0.1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 42.9
(3)
P 		10.8
(-3)
A 		22
(-0.9)
A 		20.6
(-1.2)
P 		32
B 23.9
(-1.1)
P 		17.4
(-3)
A 		23.3
(-1.3)
A 		38.1
(3)
P 		21
C 33
(3)
P 		16.8
(-3)
A 		19.5
(-2)
M 		25.6
(0.3)
P 		16
avr 33.3
(3) 		15
(-3) 		21.6
(-0.8) 		28.1
(1.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.3
(-3)
P 		21.8
(0.1)
A 		18.4
(-0.9)
A 		30.1
(2.6)
P 		31.5
(3)
P 		25.5
(1.2)
P 		20
B 21.6
(-0.7)
P 		30.3
(3)
A 		16
(-3)
A 		18.5
(-2)
A 		29
(2.5)
A 		29.8
(2.8)
P 		14
C 31.8
(2.3)
P 		20.3
(-3)
A 		21
(-2.7)
P 		22.2
(-2.1)
P 		33.4
(3)
P 		22.5
(-2)
P 		13
avr 21.6
(-1.5) 		24.1
(-0.4) 		18.5
(-3) 		23.6
(-0.6) 		31.3
(3) 		25.9
(0.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17234
Sequence Type Exemplar sequence
Representative Public ID C10A4.5 NCBI
Target Description C10A4.5 /REP_DB=WormBase Gene ID /WP=CE02473 /TR=Q17889 /GB=AAC46519.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076849(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076849 NCBI Caenorhabditis elegans C10A4.5 (C10A4.5) mRNA, complete cds. 10/11 None
GENEFINDER00000027715 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7394119:7395713:1 10/11 None
SNAP00000027705 ENSEMBL cdna:SNAP chromosome:CEL140:X:7394505:7395713:1 10/11 None
C10A4.5 ENSEMBL cdna:known chromosome:CEL140:X:7393862:7395932:1 gene:C10A4.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7394117-7395712(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10A4.5
Entrez Gene 182486 Entrez gene
SwissProt Q17889 EMBL-EBI
WormBase CE29079 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46519 Hypothetical protein C10A4.5 [Caenorhabditis elegans] ref|NP_509250.1| C10A4.5 [Caenorhabditis elegans] 1.0E-166
blast AAC46519 Hypothetical protein C10A4.5 [Caenorhabditis elegans] ref|NP_509250.1| C10A4.5 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509250.1 4 7-29,60-82,94-116,150-169
C10A4.5 4 7-29,60-82,94-116,150-169
GENEFINDER00000027715 4 7-29,60-82,94-116,150-169
Sequence
Target Sequence 
>C. ELEGANS:183167_AT
ctgtgagactgttctaccgttacgctattaacaaaagaaatcatcgactcatgcacattg
aacccatcgtggatgacatcatcagatacagaagacgtgttcaatcggagcctaatattc
cacttgttgtcaatgaggaggttgagttgccaccatcatatactgaagcaatcgcaatga
ttgaacaggtgttcaaactgcaccggtccaagaatccaatgaagcatcgatcgaatccag
agatcccatccacagtcgcaataatcgttcatccaacgtataccaatgaaaataacgatg
gaaacacaaacgatcaaactgactatgagaataaagaaacggacaacgagcgcagtggaa
atgaaacaactagcaacttgtccgccaaccagatgagaatcattgtaagcgaagcagtcc
aaaacgccatggcacatcttatcgccgtttctgacagagctcagacatcatctttgtacc
agagcgtcgtcgtcaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTGAGACTGTTCTACCGTTACGC 113 241 527 Antisense
CGACTCATGCACATTGAACCCATCG 276 251 571 Antisense
AGACGTGTTCAATCGGAGCCTAATA 13 71 619 Antisense
GAGGAGGTTGAGTTGCCACCATCAT 17 405 661 Antisense
AAACTGCACCGGTCCAAGAATCCAA 582 125 721 Antisense
GATCGAATCCAGAGATCCCATCCAC 386 415 755 Antisense
CAGTCGCAATAATCGTTCATCCAAC 662 207 779 Antisense
AAACGCCATGGCACATCTTATCGCC 474 125 948 Antisense
TCTTATCGCCGTTTCTGACAGAGCT 274 615 963 Antisense
GAGCTCAGACATCATCTTTGTACCA 8 389 983 Antisense
TGTACCAGAGCGTCGTCGTCAATGA 343 557 1001 Antisense
Sequence Source Affymetrix Proprietary Database