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[183166_at]

Description C16A3.6 /REP_DB=WormBase Gene ID /WP=CE04006 /TR=Q18035 /GB=AAB47596.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 66      6grp_total > 36      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5930
1 2 3 4 range
A 1495.9
(-1.9)
P 		923.4
(-2.6)
P 		550.5
(-3)
P 		5800.1
(3)
P 		5250
B 1597.9
(-2.2)
P 		932.6
(-3)
P 		927.3
(-3)
P 		6238.9
(3)
P 		5312
C 1648
(-2)
P 		682
(-3)
P 		894.1
(-2.8)
P 		6480.6
(3)
P 		5799
avr 1580.6
(-2.1) 		846
(-2.9) 		790.6
(-3) 		6173.2
(3) 		5383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 620
1 2 3 4 5 6 range
A 1567.4
(2.3)
P 		1567.4
(2.3)
P 		1626.2
(3)
P 		1506.2
(1.5)
P 		1149
(-3)
P 		1377.5
(-0.1)
P 		477
B 1394.1
(-3)
P 		1576.5
(2.1)
P 		1607
(3)
P 		1423.7
(-2.2)
P 		1431.3
(-2)
P 		1499.8
(-0)
P 		213
C 1687.9
(3)
P 		1547.4
(1.6)
P 		1067.6
(-3)
P 		1318.3
(-0.6)
P 		1068.6
(-3)
P 		1612
(2.3)
P 		620
avr 1549.8
(2.8) 		1563.8
(3) 		1433.6
(0.8) 		1416.1
(0.4) 		1216.3
(-3) 		1496.4
(1.8) 		348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1186
1 2 3 4 range
A 544.6
(0.4)
P 		200.5
(-2.5)
P 		143.9
(-3)
P 		849
(3)
P 		705
B 509.5
(-1.4)
P 		230.3
(-2.9)
P 		214.9
(-3)
P 		1329.5
(3)
P 		1115
C 545.5
(-0.7)
P 		196.1
(-3)
P 		311.6
(-2.2)
P 		1092.7
(3)
P 		897
avr 533.2
(-0.8) 		209
(-3) 		223.5
(-2.9) 		1090.4
(3) 		881

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 288.9
(-3)
P 		557.4
(3)
P 		354.2
(-1.5)
P 		382
(-0.9)
P 		346.7
(-1.7)
P 		335.4
(-2)
P 		269
B 485.1
(0.2)
P 		524.7
(1.3)
P 		390.2
(-2.6)
P 		377.1
(-3)
P 		581.5
(3)
P 		559.3
(2.3)
P 		204
C 625.6
(3)
P 		472.2
(0.4)
P 		271.7
(-2.9)
P 		265.1
(-3)
P 		345.8
(-1.7)
P 		539.6
(1.6)
P 		361
avr 466.5
(1.3) 		518.1
(3) 		338.7
(-3) 		341.4
(-2.9) 		424.7
(-0.1) 		478.1
(1.7) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7772
Sequence Type Exemplar sequence
Representative Public ID C16A3.6 NCBI
Target Description C16A3.6 /REP_DB=WormBase Gene ID /WP=CE04006 /TR=Q18035 /GB=AAB47596.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065994 NCBI Caenorhabditis elegans C16A3.6 (C16A3.6) mRNA, complete cds. 11/11 None
SNAP00000030741 ENSEMBL cdna:SNAP chromosome:CEL140:III:6379399:6380471:1 11/11 None
GENEFINDER00000030790 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6379399:6380471:1 11/11 None
C16A3.6 ENSEMBL cdna:known chromosome:CEL140:III:6379386:6380593:1 gene:C16A3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6379397-6380470(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16A3.6
Entrez Gene 175903 Entrez gene
SwissProt Q18035 EMBL-EBI
WormBase CE04006 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263039_AT MAK16 protein-related at
CANINE_2:CFA.19853.1.S1_AT similar to RNA binding motif protein 13 cfa
CANINE_2:CFA.21042.1.S1_S_AT similar to RNA binding motif protein 13 cfa
CANINE_2:CFA.21042.2.S1_AT similar to RNA binding motif protein 13 cfa
CANINE_2:CFAAFFX.10477.1.S1_AT similar to RNA binding motif protein 13 cfa
DROSOPHILA_2:1625046_AT dm
DROSGENOME1:144716_AT dm
CHICKEN:GGA.7587.1.S1_AT RNA binding motif protein 13 gga
HG-U133_PLUS_2:211686_S_AT RNA binding motif protein 13 hs
HG-U133A:211686_S_AT RNA binding motif protein 13 hs
HG-U133A_2:211686_S_AT RNA binding motif protein 13 hs
HU35KSUBA:N23780_AT RNA binding motif protein 13 hs
HU35KSUBC:RC_N20099_F_AT RNA binding motif protein 13 hs
HU35KSUBC:RC_N20099_I_AT RNA binding motif protein 13 hs
HU35KSUBC:RC_D25669_AT RNA binding motif protein 13 hs
U133_X3P:G13625185_3P_S_AT RNA binding motif protein 13 hs
HG-U95AV2:37297_AT RNA binding motif protein 13 hs
MG-U74AV2:93980_AT RNA binding motif protein 13 mm
MOE430A:1426426_AT RNA binding motif protein 13 mm
MOUSE430A_2:1426426_AT RNA binding motif protein 13 mm
MOUSE430_2:1426426_AT RNA binding motif protein 13 mm
MOE430B:1457906_AT RNA binding motif protein 13, mRNA (cDNA clone MGC:6379 IMAGE:3499754) mm
MOUSE430_2:1457906_AT RNA binding motif protein 13, mRNA (cDNA clone MGC:6379 IMAGE:3499754) mm
MU19KSUBC:TC39990_AT RNA binding motif protein 13, mRNA (cDNA clone MGC:6379 IMAGE:3499754) mm
RAE230A:1377656_AT similar to 2600016B03Rik protein (predicted) rn
RAT230_2:1377656_AT similar to 2600016B03Rik protein (predicted) rn
RAE230B:1395152_AT similar to 2600016B03Rik protein (predicted) rn
RAT230_2:1395152_AT similar to 2600016B03Rik protein (predicted) rn
YEAST_2:1779169_AT Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for normal concentration of free 60S ribosomal subunits; required for maintenance of M1 satellite double-stranded RNA of the L-A virus Sc
Protein Similarities
Method ID Description E-Value
blast AAB47596 Hypothetical protein C16A3.6 [Caenorhabditis elegans] ref|NP_498395.1| C16A3.6 [Caenorhabditis elegans] 1.0E-116
blast CAE72510 Hypothetical protein CBG19689 [Caenorhabditis briggsae] 1.0E-106
blast AAH66636 Mak16-like homolog [Danio rerio] sp|Q6NYD4|RBM13_BRARE MAK16-like protein RBM13 (RNA binding motif protein 13) 9.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR006958 EMBL-EBI Mak16 protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183166_AT
aatggcagtccgtggaaaccagaagaaactcattccaattggacggaaagtggaaagacg
tgagaaacgtcgtgaagagaaggcacttgttgcagctaaacttgatcacgctattgagaa
agagctcttagccagacttaaacaaggaacatatggcgatgtttacaacttccgtcaaga
ggcattcgaacaaatgctggaaaacactgaaaaagagttggaagtggagcaagaactcga
gcaggacgacgcagacacgggtgagactcagttcgtcgctgactttgatagttccgacga
tgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCAGTCCGTGGAAACCAGAAG 254 161 384 Antisense
GAAGAAACTCATTCCAATTGGACGG 280 339 405 Antisense
GAGAAGGCACTTGTTGCAGCTAAAC 538 391 460 Antisense
GCAGCTAAACTTGATCACGCTATTG 468 313 475 Antisense
GAGCTCTTAGCCAGACTTAAACAAG 15 389 505 Antisense
ATGGCGATGTTTACAACTTCCGTCA 487 51 536 Antisense
ACTTCCGTCAAGAGGCATTCGAACA 305 103 551 Antisense
GAACTCGAGCAGGACGACGCAGACA 468 349 616 Antisense
GACGCAGACACGGGTGAGACTCAGT 58 381 631 Antisense
GACTCAGTTCGTCGCTGACTTTGAT 537 371 648 Antisense
GACTTTGATAGTTCCGACGATGAGG 605 371 664 Antisense
Sequence Source Affymetrix Proprietary Database