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[183165_s_at]

Description R09A1.2 /REP_DB=WormBase Gene ID /WP=CE18128 /TR=O61932 /GB=AAC17776.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 50      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 21.7
(-1.7)
A 		67
(1.6)
A 		86.9
(3)
A 		2.9
(-3)
A 		84
B 11.2
(-2.7)
A 		68.4
(3)
A 		26.3
(-1.2)
A 		8.3
(-3)
A 		60
C 6.6
(-3)
A 		47.4
(2.3)
A 		52.7
(3)
A 		11.6
(-2.3)
A 		46
avr 13.2
(-2.4) 		60.9
(3) 		55.3
(2.4) 		7.6
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 45.9
(-0.4)
A 		2.5
(-2.9)
A 		1.4
(-3)
A 		5.4
(-2.8)
A 		67.4
(0.8)
A 		104.4
(3)
A 		103
B 5.7
(-2.7)
A 		7.1
(-2.7)
A 		1.6
(-3)
A 		3.9
(-2.9)
A 		89.2
(2.4)
P 		99.1
(3)
P 		98
C 41.2
(-0.8)
A 		2.4
(-3)
A 		12
(-2.5)
A 		11.7
(-2.5)
A 		99.6
(2.5)
P 		108.1
(3)
P 		106
avr 30.9
(-1.4) 		4
(-3) 		5
(-2.9) 		7
(-2.8) 		85.4
(1.9) 		103.9
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 7.9
(-1)
A 		14.6
(0.8)
A 		22.7
(3)
A 		0.4
(-3)
A 		22
B 3.6
(-2.3)
A 		16.9
(3)
A 		6.1
(-1.3)
A 		1.8
(-3)
A 		15
C 2.2
(-2.9)
A 		13.6
(1.2)
A 		18.4
(3)
A 		2
(-3)
A 		16
avr 4.6
(-1.7) 		15
(2.7) 		15.7
(3) 		1.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 8.5
(-1)
A 		0.9
(-2.9)
A 		0.3
(-3)
A 		1.4
(-2.7)
A 		20.4
(1.8)
A 		25.4
(3)
A 		25
B 2
(-2.7)
A 		2.4
(-2.7)
A 		0.4
(-3)
A 		1
(-2.9)
A 		36.2
(2.9)
P 		36.9
(3)
P 		37
C 15.3
(-0.5)
A 		0.7
(-3)
A 		3.1
(-2.6)
A 		2.4
(-2.7)
A 		32.2
(2.3)
P 		36.2
(3)
P 		36
avr 8.6
(-1.6) 		1.3
(-3) 		1.3
(-3) 		1.6
(-2.9) 		29.6
(2.4) 		32.8
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183165_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14798
Sequence Type Exemplar sequence
Representative Public ID R09A1.2 NCBI
Target Description R09A1.2 /REP_DB=WormBase Gene ID /WP=CE18128 /TR=O61932 /GB=AAC17776.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070962 NCBI Caenorhabditis elegans R09A1.2 (R09A1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000044512 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1018389:1029652:-1 10/11 None
R09A1.2 ENSEMBL cdna:known chromosome:CEL140:V:1018230:1022741:-1 gene:R09A1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044508 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1018229-1022741(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09A1.2
Entrez Gene 178603 Entrez gene
SwissProt O61932 EMBL-EBI
WormBase CE18128 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17776 Hypothetical protein R09A1.2 [Caenorhabditis elegans] ref|NP_503363.1| R09A1.2 [Caenorhabditis elegans] 0.0
blast AAC17777 Hypothetical protein R09A1.3 [Caenorhabditis elegans] ref|NP_503364.1| R09A1.3 [Caenorhabditis elegans] 1.0E-147
blast CAE71047 Hypothetical protein CBG17889 [Caenorhabditis briggsae] 1.0E-137
blast CAE71091 Hypothetical protein CBG17941 [Caenorhabditis briggsae] 1.0E-103
blast CAE71046 Hypothetical protein CBG17888 [Caenorhabditis briggsae] 1.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.3E-23
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.3E-23
Sequence
Target Sequence 
>C. ELEGANS:183165_S_AT
tccttcacgacacatactcgaccaatcgcctgtcctacgaagaaattctgagcctgtcga
cgaacacggtgatcacatgtctgtcggcacgaattccggactttaagaaggtcgacatca
tcaatatgtcgttgaagtggatctacgagcgtcatctcaacgatcacaaggcgtgcaaga
ttctgcaaggtctgacgctcggctcgatgacctacgcggagctggtgaatttgcgaaatt
cgttgattcaaaccgcgattcctgtgacaatcggaagatgtgttcgtttgaagcgtcggg
agaacgatacgctcgacattgtgttcacctacggcgaatcttcaggatatcagaaaccgg
gcatcaagccaacgatcacatcctcgttcaccatgaataatgacccaacgtctggcgccg
ggacaccatctacgaagactagtcgttccccaagcaacaagttcgacgatgcaatctccg
agtcttggaacgtcaatctcgatgattgcaacacggccatgtcgttcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTCACGACACATACTCGACCAA 524 591 656 Antisense
GAGCCTGTCGACGAACACGGTGATC 576 385 705 Antisense
GTCTGTCGGCACGAATTCCGGACTT 701 471 734 Antisense
GTGGATCTACGAGCGTCATCTCAAC 156 491 792 Antisense
AGATTCTGCAAGGTCTGACGCTCGG 585 65 833 Antisense
TTCAAACCGCGATTCCTGTGACAAT 73 687 902 Antisense
ATACGCTCGACATTGTGTTCACCTA 554 23 962 Antisense
GTTCACCTACGGCGAATCTTCAGGA 447 445 978 Antisense
GAATAATGACCCAACGTCTGGCGCC 271 327 1050 Antisense
GACGATGCAATCTCCGAGTCTTGGA 72 379 1120 Antisense
TTGCAACACGGCCATGTCGTTCAAC 429 701 1161 Antisense
Sequence Source Affymetrix Proprietary Database