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[183164_at] 7TM chemoreceptor, srab family

Description C04F5.6 /REP_DB=WormBase Gene ID /WP=CE19670 /TR=Q9GZD2 /GB=AAF98597.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 03      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 39.6
(-0.8)
A 		4.6
(-3)
A 		7.4
(-2.8)
A 		98.6
(3)
A 		94
B 20.4
(-1.6)
A 		9.3
(-3)
A 		18
(-1.9)
A 		57.9
(3)
A 		49
C 13.7
(-2.5)
A 		34.8
(-1)
A 		6.3
(-3)
A 		92.2
(3)
P 		86
avr 24.6
(-1.8) 		16.2
(-2.5) 		10.6
(-3) 		82.9
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 12.5
(-2)
A 		10.4
(-2.3)
A 		50.3
(3)
A 		14.7
(-1.7)
A 		14.2
(-1.8)
A 		5.1
(-3)
A 		45
B 25.9
(0.6)
A 		5.2
(-2.4)
A 		19
(-0.4)
A 		41.7
(3)
A 		15.7
(-0.9)
A 		1.4
(-3)
A 		40
C 23.3
(-0.8)
A 		45.1
(3)
A 		19.4
(-1.4)
A 		19.2
(-1.5)
A 		10.3
(-3)
A 		21.5
(-1.1)
A 		35
avr 20.6
(0.3) 		20.2
(0.2) 		29.6
(3) 		25.2
(1.7) 		13.4
(-1.8) 		9.3
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.4
(3)
A 		1
(-3)
A 		1.9
(-2.6)
A 		14.4
(3)
A 		13
B 6.5
(-0.5)
A 		2.3
(-3)
A 		4.2
(-1.9)
A 		12.3
(3)
A 		10
C 4.5
(-2)
A 		10
(0.5)
A 		2.2
(-3)
A 		15.6
(3)
P 		13
avr 8.5
(0) 		4.4
(-2.2) 		2.8
(-3) 		14.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.3
(-2.3)
A 		3.7
(-1.5)
A 		10.9
(3)
A 		3.7
(-1.5)
A 		4.3
(-1.1)
A 		1.2
(-3)
A 		10
B 9
(1.9)
A 		1.7
(-2.3)
A 		4.6
(-0.7)
A 		11
(3)
A 		6.4
(0.4)
A 		0.5
(-3)
A 		11
C 8.7
(0.1)
A 		13.8
(3)
A 		4.9
(-2.1)
A 		3.9
(-2.7)
A 		3.3
(-3)
A 		7.2
(-0.8)
A 		11
avr 6.7
(2.8) 		6.4
(2.4) 		6.8
(3) 		6.2
(2.1) 		4.7
(-0.3) 		3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15311
Sequence Type Exemplar sequence
Representative Public ID C04F5.6 NCBI
Target Description C04F5.6 /REP_DB=WormBase Gene ID /WP=CE19670 /TR=Q9GZD2 /GB=AAF98597.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071967(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071967 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-3) (srab-3) mRNA, complete cds. 10/11 None
GENEFINDER00000034414 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5097177:5110579:-1 11/11 None
C04F5.6 ENSEMBL cdna:known chromosome:CEL140:V:5105618:5107669:-1 gene:C04F5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034405 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5105617-5107669(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-3
Ensembl C04F5.6
Entrez Gene 182222 Entrez gene
SwissProt Q9GZD2 EMBL-EBI
WormBase CE38139 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98597 Serpentine receptor, class ab (class a-like) protein 3 [Caenorhabditis elegans] ref|NP_504368.2| Serpentine Receptor, class AB (class A-like) family member (srab-3) [Caenorhabditis elegans] 0.0
blast AAF98598 Udp-glucuronosyltransferase protein 63 [Caenorhabditis elegans] ref|NP_504369.1| C04F5.7 [Caenorhabditis elegans] 0.0
blast CAE64076 Hypothetical protein CBG08680 [Caenorhabditis briggsae] 0.0
blast AAF98595 Serpentine receptor, class ab (class a-like) protein 1 [Caenorhabditis elegans] ref|NP_504366.1| Serpentine Receptor, class AB (class A-like) family member (srab-1) [Caenorhabditis elegans] 0.0
blast AAF98597 Serpentine receptor, class ab (class a-like) protein 3 [Caenorhabditis elegans] ref|NP_504368.2| Serpentine Receptor, class AB (class A-like) family member (srab-3) [Caenorhabditis elegans] 1.0E-171
blast CAE64071 Hypothetical protein CBG08673 [Caenorhabditis briggsae] 1.0E-111
blast CAE64074 Hypothetical protein CBG08677 [Caenorhabditis briggsae] 1.0E-108
blast CAE64071 Hypothetical protein CBG08673 [Caenorhabditis briggsae] 1.0E-104
blast CAE64074 Hypothetical protein CBG08677 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 8.6E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504368.2 6 21-43,56-75,140-159,184-206,241-263,273-295
C04F5.6 6 21-43,56-75,104-126,159-181,216-238,248-270
GENEFINDER00000034414 20 561-583,596-615,645-667,680-699,724-746,781-803,813-835,937-959,969-988,1053-1075,1097-1119,1154-1176,1186-1208,1274-1296,1311-1330,1395-1414,1439-1461,1496-1518,1528-1547,1616-1638
Sequence
Target Sequence 
>C. ELEGANS:183164_AT
tcatcactcatacatcaacttcggcgaacagattgtcagttaacataccaactttcttta
tattttttacacaactcgctacaatacccggtctactgtatttgttgcggaaaaacgagg
aacttcgagcttcttctttgcacaagcacagcacactaactgaacgatatcaaatctcgg
agaatctgcgaacatcgacaatgtttcggataatgagtgtggttacttgggtgtatgtgg
catacaaagctataggatcatatatgatgtatttcatagaaagtgtattattaccagatc
tatttgcaattactgaagtaatccattgccttcccttatattatatcattctcgctgctc
tgataactcgtgtcgacaggaaacctcgtagtgaattcaaagtgaacaactacgaaacac
atcactttgtggagctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCACTCATACATCAACTTCGGC 578 619 449 Antisense
CAACTTCGGCGAACAGATTGTCAGT 291 189 464 Antisense
TTTTACACAACTCGCTACAATACCC 479 673 513 Antisense
TACCCGGTCTACTGTATTTGTTGCG 423 647 533 Antisense
ACGAGGAACTTCGAGCTTCTTCTTT 465 93 563 Antisense
CTTCTTCTTTGCACAAGCACAGCAC 524 221 578 Antisense
CATTGCCTTCCCTTATATTATATCA 578 217 772 Antisense
TATTATATCATTCTCGCTGCTCTGA 147 663 787 Antisense
TCGCTGCTCTGATAACTCGTGTCGA 439 599 800 Antisense
ACTCGTGTCGACAGGAAACCTCGTA 392 79 814 Antisense
GAAACACATCACTTTGTGGAGCTGC 609 355 862 Antisense
Sequence Source Affymetrix Proprietary Database