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[183163_at]

Description B0554.4 /REP_DB=WormBase Gene ID /WP=CE07776 /TR=P91004 /GB=AAB37613.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.7
(-2.3)
A 		17.4
(3)
A 		4.2
(-3)
A 		8
(-1.3)
A 		13
B 5.8
(1.9)
A 		4.6
(0.2)
A 		6.6
(3)
A 		2.3
(-3)
A 		4
C 6.1
(2)
A 		4.6
(0.1)
A 		2.1
(-3)
A 		6.9
(3)
A 		5
avr 5.9
(-0.9) 		8.9
(3) 		4.3
(-3) 		5.7
(-1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8
(-2)
A 		2.9
(-3)
A 		32.2
(3)
A 		3.3
(-2.9)
A 		4.2
(-2.7)
A 		26.7
(1.9)
A 		29
B 3.4
(-1.3)
A 		4.1
(-0.5)
A 		7.3
(3)
A 		2.7
(-2)
A 		4.1
(-0.5)
A 		1.8
(-3)
A 		6
C 9.7
(-0.7)
A 		2.5
(-2.9)
A 		21
(2.7)
A 		22.1
(3)
A 		4.7
(-2.2)
A 		2.1
(-3)
A 		20
avr 7
(-1.7) 		3.2
(-3) 		20.2
(3) 		9.4
(-0.8) 		4.3
(-2.6) 		10.2
(-0.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.1
(-0.8)
A 		3.8
(3)
A 		1.1
(-3)
A 		1.2
(-2.8)
A 		3
B 1.8
(3)
A 		1.1
(-0.2)
A 		1.5
(1.6)
A 		0.5
(-3)
A 		1
C 2
(3)
A 		1.3
(-0.2)
A 		0.7
(-3)
A 		1.2
(-0.7)
A 		1
avr 2
(2.5) 		2.1
(3) 		1.1
(-2.5) 		1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.5
(-2.3)
A 		1
(-2.8)
A 		7
(3)
A 		0.8
(-3)
A 		1.3
(-2.5)
A 		6.5
(2.5)
A 		6
B 1.2
(-0.3)
A 		1.4
(0.8)
A 		1.8
(3)
A 		0.7
(-3)
A 		1.7
(2.5)
A 		0.7
(-3)
A 		1
C 3.6
(0.8)
A 		0.8
(-2.9)
A 		5.3
(3)
A 		4.4
(1.8)
A 		1.5
(-2)
A 		0.7
(-3)
A 		5
avr 2.1
(-1.3) 		1.1
(-3) 		4.7
(3) 		2
(-1.5) 		1.5
(-2.3) 		2.6
(-0.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183163_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14847
Sequence Type Exemplar sequence
Representative Public ID B0554.4 NCBI
Target Description B0554.4 /REP_DB=WormBase Gene ID /WP=CE07776 /TR=P91004 /GB=AAB37613.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070797 NCBI Caenorhabditis elegans B0554.4 (B0554.4) mRNA, complete cds. 11/11 None
SNAP00000032184 ENSEMBL cdna:SNAP chromosome:CEL140:V:432782:433403:1 10/11 None
GENEFINDER00000032192 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:428973:433403:1 11/11 None
B0554.4 ENSEMBL cdna:known chromosome:CEL140:V:430441:433403:1 gene:B0554.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:430440-433403(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0554.4
Entrez Gene 182035 Entrez gene
SwissProt P91004 EMBL-EBI
WormBase CE07776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37613 Hypothetical protein B0554.4 [Caenorhabditis elegans] ref|NP_503198.1| B0554.4 [Caenorhabditis elegans] 0.0
blast AAB37615 Hypothetical protein B0554.2 [Caenorhabditis elegans] ref|NP_503200.1| B0554.2 [Caenorhabditis elegans] 1.0E-154
blast AAB37613 Hypothetical protein B0554.4 [Caenorhabditis elegans] ref|NP_503198.1| B0554.4 [Caenorhabditis elegans] 1.0E-106
blast AAB70945 Hypothetical protein B0454.8 [Caenorhabditis elegans] ref|NP_494430.1| B0454.8 [Caenorhabditis elegans] 2.0E-99
blast AAB70945 Hypothetical protein B0454.8 [Caenorhabditis elegans] ref|NP_494430.1| B0454.8 [Caenorhabditis elegans] 4.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 5.8E-25
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 3.2E-72
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 1.2E-69
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.8E-75
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.0E-68
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 6.4E-52
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.0E-68
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 7.8E-38
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 3.2E-72
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 1.2E-69
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.8E-75
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.0E-68
Sequence
Target Sequence 
>C. ELEGANS:183163_AT
aactgacttcatgtctacaccgatcgctggcacaattgaaacaacttcaacaatgaaagt
cagttgttcagccatagacaaatatcatgcagtcatgacagtgaatgctataggagctgc
ggagaacgacttggtccctcctccgcagacagttaccatcaacgcagagtgcagtagtgt
agatatgatttggtactacgtgtccactgtcggaggtaccagaagagttatggattcggt
tacttgtgcacaaagtacctgctcaccaaaatcgttgacgtatggggtgggagataatca
aacaccacaattccagattgatgttggttattctgacttcatgactactccaaatggtgc
aacagagacaatatccacaatgaaaatcagttgcacggccattgctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGACTTCATGTCTACACCGATC 215 143 1002 Antisense
TACACCGATCGCTGGCACAATTGAA 178 643 1017 Antisense
AGCTGCGGAGAACGACTTGGTCCCT 412 81 1116 Antisense
TCCGCAGACAGTTACCATCAACGCA 1 597 1143 Antisense
GATTTGGTACTACGTGTCCACTGTC 166 427 1188 Antisense
TACGTGTCCACTGTCGGAGGTACCA 461 647 1198 Antisense
TATGGATTCGGTTACTTGTGCACAA 637 655 1230 Antisense
TTGTGCACAAAGTACCTGCTCACCA 396 709 1245 Antisense
ACCTGCTCACCAAAATCGTTGACGT 442 87 1258 Antisense
ATTCTGACTTCATGACTACTCCAAA 126 11 1331 Antisense
ATCAGTTGCACGGCCATTGCTGGAT 609 27 1387 Antisense
Sequence Source Affymetrix Proprietary Database