[Home] | [Total List]

[183161_at]

Description R01H10.6 /REP_DB=WormBase Gene ID /WP=CE01042 /TR=Q21626 /GB=CAA83463.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 16      6grp_total > 17      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 281.9
(3)
P 		106.6
(-2.6)
M 		92.7
(-3)
P 		128.2
(-1.9)
P 		189
B 210
(3)
P 		108.4
(-2.4)
P 		96.4
(-3)
A 		178.2
(1.3)
P 		114
C 266.9
(3)
P 		93.1
(-2.1)
P 		61.4
(-3)
P 		137.8
(-0.8)
M 		206
avr 252.9
(3) 		102.7
(-2.3) 		83.5
(-3) 		148.1
(-0.7) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 178.5
(3)
P 		126.9
(0)
P 		85.1
(-2.4)
P 		84.4
(-2.5)
P 		75.2
(-3)
A 		102.7
(-1.4)
A 		103
B 203.5
(3)
P 		80.2
(-2.7)
P 		132.6
(-0.3)
P 		93.9
(-2.1)
M 		74.7
(-3)
A 		93.3
(-2.1)
A 		129
C 201.3
(3)
P 		89.4
(-1.8)
P 		105.4
(-1.1)
P 		60.8
(-3)
A 		65.1
(-2.8)
A 		139.7
(0.4)
P 		141
avr 194.4
(3) 		98.8
(-1.7) 		107.7
(-1.2) 		79.7
(-2.6) 		71.7
(-3) 		111.9
(-1) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 102.6
(3)
P 		23.1
(-2.7)
M 		24.2
(-2.6)
P 		18.8
(-3)
P 		84
B 67
(3)
P 		26.8
(-2.4)
P 		22.3
(-3)
A 		38
(-0.9)
P 		45
C 88.4
(3)
P 		26.8
(-2.5)
P 		21.4
(-3)
P 		23.2
(-2.8)
M 		67
avr 86
(3) 		25.6
(-2.7) 		22.6
(-3) 		26.7
(-2.6) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 32.9
(0.2)
P 		45.1
(3)
P 		18.5
(-3)
P 		21.4
(-2.3)
P 		22.7
(-2.1)
A 		25
(-1.5)
A 		27
B 70.8
(3)
P 		26.7
(-2.8)
P 		32.2
(-2)
P 		24.9
(-3)
M 		30.4
(-2.3)
A 		34.8
(-1.7)
A 		46
C 74.6
(3)
P 		27.3
(-1.5)
P 		26.8
(-1.6)
P 		12.2
(-3)
A 		21.1
(-2.1)
A 		46.8
(0.3)
P 		62
avr 59.4
(3) 		33
(-1) 		25.8
(-2.1) 		19.5
(-3) 		24.7
(-2.2) 		35.5
(-0.6) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183161_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7657
Sequence Type Exemplar sequence
Representative Public ID R01H10.6 NCBI
Target Description R01H10.6 /REP_DB=WormBase Gene ID /WP=CE01042 /TR=Q21626 /GB=CAA83463.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066871 NCBI Caenorhabditis elegans R01H10.6 (R01H10.6) mRNA, complete cds. 11/11 None
SNAP00000005992 ENSEMBL cdna:SNAP chromosome:CEL140:III:10258761:10261547:-1 11/11 None
GENEFINDER00000005997 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10258761:10261547:-1 11/11 None
R01H10.6 ENSEMBL cdna:known chromosome:CEL140:III:10258761:10261547:-1 gene:R01H10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10258756-10261543(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01H10.6
Entrez Gene 187516 Entrez gene
SwissProt Q21626 EMBL-EBI
WormBase CE01042 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.19085.1.S1_AT similar to Bardet-Biedl syndrome 5 cfa
CANINE_2:CFAAFFX.19088.1.S1_S_AT similar to Bardet-Biedl syndrome 5 cfa
DROSOPHILA_2:1627157_AT dm
DROSGENOME1:149296_AT dm
CHICKEN:GGA.19986.1.S1_AT Bardet-Biedl syndrome 5 gga
HU35KSUBD:RC_AA447982_AT Bardet-Biedl syndrome 5 hs
U133_X3P:HS.99148.0.A1_3P_X_AT Bardet-Biedl syndrome 5 hs
U133_X3P:HS.99148.0.A1_3P_AT Bardet-Biedl syndrome 5 hs
HG-U133_PLUS_2:230697_AT Bardet-Biedl syndrome 5 hs
HG-U133B:230697_AT Bardet-Biedl syndrome 5 hs
HG-U95C:48772_AT Bardet-Biedl syndrome 5 hs
HG-U95E:73240_R_AT Bardet-Biedl syndrome 5 hs
HG-U95D:74424_AT Bardet-Biedl syndrome 5 hs
MG-U74BV2:163856_AT Bardet-Biedl syndrome 5 (human) mm
MOE430B:1429762_A_AT Bardet-Biedl syndrome 5 (human) mm
MOUSE430_2:1429762_A_AT Bardet-Biedl syndrome 5 (human) mm
RAE230B:1378656_AT Bardet-Biedl syndrome 5 (predicted) rn
RAT230_2:1378656_AT Bardet-Biedl syndrome 5 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16462 pyrophosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83463 Hypothetical protein R01H10.6 [Caenorhabditis elegans] ref|NP_499272.1| R01H10.6 [Caenorhabditis elegans] 0.0
blast CAE56179 Hypothetical protein CBG23799 [Caenorhabditis briggsae] 1.0E-153
blast XP_422011 PREDICTED: similar to Hypothetical protein MGC56578 [Gallus gallus] 7.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR006606 EMBL-EBI Protein of unknown function DM16 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183161_AT
gacggaactctgaagatccttccacaagagacgatcatcgagaaggtgaacggtgtctgg
aatctgtcgacggagactggaagtctcggagtctttgtgatcacgaatattcgtgtcgtt
tggtacgcagagatgaacatcggatacaatgtttcggtcccctacattactctatattca
gtcagagttagagagtccaagtttggaatggcgctggttcttgagacaactaccagcagc
ggagagtacgtgttgggattcagagttgatcctgctgaacgtctacaaaatcttctgaaa
actgtacaatcacttcataaggcgcatttgttgaagccaatctttggagtttcgtatgtc
aaggagattgccgagaaagtagagccccgcaaggacgacgatgaaatcgacatcatagac
aacaacgaagatgacgtagaaatcgacgataaaatccgtcccgacgcgtttgcttcatac
tttgacggggagcacaccgcgactgacgagaagcagctaccggtgctcaaccccgagttg
ggattggcgattgaaccgattcgtaacggattcactcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGAACTCTGAAGATCCTTCCAC 594 375 487 Antisense
GTGAACGGTGTCTGGAATCTGTCGA 443 479 532 Antisense
GAAGTCTCGGAGTCTTTGTGATCAC 234 337 566 Antisense
TCGGATACAATGTTTCGGTCCCCTA 396 605 626 Antisense
GTCCCCTACATTACTCTATATTCAG 292 475 643 Antisense
GAATGGCGCTGGTTCTTGAGACAAC 467 333 692 Antisense
AGAGTTGATCCTGCTGAACGTCTAC 155 69 748 Antisense
GACGCGTTTGCTTCATACTTTGACG 599 379 949 Antisense
CGAGAAGCAGCTACCGGTGCTCAAC 651 249 993 Antisense
GTGCTCAACCCCGAGTTGGGATTGG 671 473 1009 Antisense
GATTCGTAACGGATTCACTCTTCAT 455 431 1044 Antisense
Sequence Source Affymetrix Proprietary Database