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[183160_at]

Description C08A9.4 /REP_DB=WormBase Gene ID /WP=CE06786 /TR=Q17807 /GB=AAB53816.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 3.3
(-3)
A 		6
(-2.9)
A 		6.6
(-2.8)
A 		127.7
(3)
A 		124
B 6.6
(-2.8)
A 		50.3
(3)
A 		4.8
(-3)
A 		26.9
(-0.1)
A 		46
C 15.4
(-2.1)
A 		7
(-3)
A 		26.5
(-0.9)
A 		63.4
(3)
A 		56
avr 8.4
(-3) 		21.1
(-1.8) 		12.6
(-2.6) 		72.7
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 6.2
(-2.9)
A 		5.5
(-3)
A 		7.8
(-2.7)
A 		45.7
(1.8)
A 		55.3
(3)
A 		53.1
(2.7)
P 		50
B 5.6
(-3)
A 		13.5
(-2.1)
A 		36.4
(0.6)
A 		45.5
(1.7)
A 		41.6
(1.3)
P 		56.4
(3)
P 		51
C 11.7
(-3)
A 		30.5
(-1)
A 		42.3
(0.3)
A 		67.7
(3)
A 		67.7
(3)
A 		45.6
(0.6)
A 		56
avr 7.8
(-3) 		16.5
(-1.9) 		28.8
(-0.3) 		53
(2.8) 		54.9
(3) 		51.7
(2.6) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.2
(-3)
A 		1.3
(-3)
A 		1.7
(-2.8)
A 		18.7
(3)
A 		18
B 2.1
(-2.5)
A 		12.4
(3)
A 		1.1
(-3)
A 		5.7
(-0.6)
A 		11
C 5.1
(-0.9)
A 		2
(-3)
A 		9.2
(2)
A 		10.7
(3)
A 		9
avr 2.8
(-3) 		5.2
(-1.4) 		4
(-2.2) 		11.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.9
(-2.7)
A 		1.7
(-2.8)
A 		11.6
(1)
A 		16.7
(3)
A 		12.9
(1.5)
P 		16
B 2
(-3)
A 		4.5
(-2.2)
A 		8.8
(-0.9)
A 		12.1
(0.2)
A 		16.9
(1.7)
P 		21
(3)
P 		19
C 4.3
(-3)
A 		9.3
(-1.3)
A 		10.8
(-0.8)
A 		13.6
(0.2)
A 		21.9
(3)
A 		15.3
(0.8)
A 		18
avr 2.5
(-3) 		5.2
(-2) 		7.1
(-1.3) 		12.4
(0.7) 		18.5
(3) 		16.4
(2.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17783
Sequence Type Exemplar sequence
Representative Public ID C08A9.4 NCBI
Target Description C08A9.4 /REP_DB=WormBase Gene ID /WP=CE06786 /TR=Q17807 /GB=AAB53816.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078361 NCBI Caenorhabditis elegans C08A9.4 (C08A9.4) mRNA, complete cds. 11/11 None
GENEFINDER00000037429 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17087401:17091624:-1 11/11 None
C08A9.4 ENSEMBL cdna:known chromosome:CEL140:X:17089119:17089785:-1 gene:C08A9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037421 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17089118-17089785(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08A9.4
Entrez Gene 182384 Entrez gene
SwissProt Q17807 EMBL-EBI
WormBase CE06786 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 1.0E-169
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 1.0E-158
blast AAB53817 Hypothetical protein C08A9.3 [Caenorhabditis elegans] ref|NP_510761.1| C08A9.3 [Caenorhabditis elegans] 1.0E-141
blast AAB53816 Hypothetical protein C08A9.4 [Caenorhabditis elegans] ref|NP_510762.1| C08A9.4 [Caenorhabditis elegans] 4.0E-97
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 4.0E-61
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 1.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510762.1 3 67-86,118-140,161-178
C08A9.4 3 67-86,118-140,161-178
GENEFINDER00000037429 10 244-266,323-342,374-396,417-434,444-461,473-492,497-519,560-579,584-606,618-637
Sequence
Target Sequence 
>C. ELEGANS:183160_AT
aaatggcttgaccgacgcgaaaacaatgagcctaacatcctcgatggaacggattcagag
ggaaacgtacttgtggataaaatatggttatttgataagccttctatgatagttagtcat
aaggagtatcagaaactgaagcttgtgaaggattccaagtacttcaacttcttatttttt
caaatcttcggatcaattctcccctcattaacaactctcttcgataaacagaaaacttca
aacaatctaaacttctgctatctaaactttctctgctctttggaatttctctgtttcaaa
tccttcaattcaatgacaagtgctagcagtctcgcagtcatcggagttttgaatttgata
attgtttttcgcgaaaagattttctctttcaaaataccacgactaccaaccactcatgga
ctgcagcaaagagacgctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGCTTGACCGACGCGAAAACA 223 121 49 Antisense
CAATGAGCCTAACATCCTCGATGGA 96 181 72 Antisense
CAAATCTTCGGATCAATTCTCCCCT 553 193 229 Antisense
CCTCATTAACAACTCTCTTCGATAA 77 269 251 Antisense
AACTTCTGCTATCTAAACTTTCTCT 279 139 298 Antisense
TTCTCTGCTCTTTGGAATTTCTCTG 35 693 317 Antisense
GAATTTCTCTGTTTCAAATCCTTCA 693 325 331 Antisense
AAGTGCTAGCAGTCTCGCAGTCATC 621 157 366 Antisense
TTCAAAATACCACGACTACCAACCA 582 683 436 Antisense
CTACCAACCACTCATGGACTGCAGC 350 225 451 Antisense
GGACTGCAGCAAAGAGACGCTCCAA 361 525 466 Antisense
Sequence Source Affymetrix Proprietary Database