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[183159_at]

Description F09F9.2 /REP_DB=WormBase Gene ID /WP=CE04347 /TR=Q19281 /GB=AAA81761.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 53      6grp_total > 10      4grp_total > 49      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2504
1 2 3 4 range
A 41.5
(-3)
A 		2518.7
(3)
P 		2287.2
(2.4)
P 		161.9
(-2.7)
P 		2477
B 14.7
(-3)
A 		2272.2
(3)
P 		2198.6
(2.8)
P 		127
(-2.7)
P 		2258
C 59.1
(-3)
A 		2388.5
(3)
P 		2228.8
(2.6)
P 		77.8
(-3)
P 		2329
avr 38.4
(-3) 		2393.1
(3) 		2238.2
(2.6) 		122.2
(-2.8) 		2355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1431
1 2 3 4 5 6 range
A 218.2
(-3)
P 		1644.5
(3)
P 		976
(0.2)
P 		1362.5
(1.8)
P 		904
(-0.1)
P 		213.9
(-3)
P 		1431
B 218.9
(-3)
P 		1368.7
(3)
P 		1147.6
(1.8)
P 		945.8
(0.8)
P 		1141
(1.8)
P 		290.7
(-2.6)
P 		1150
C 247.3
(-3)
P 		1458.6
(3)
P 		1095
(1.2)
P 		1092.4
(1.2)
P 		1004.8
(0.8)
P 		336
(-2.6)
P 		1211
avr 228.1
(-3) 		1490.6
(3) 		1072.9
(1) 		1133.6
(1.3) 		1016.6
(0.7) 		280.2
(-2.8) 		1263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 772
1 2 3 4 range
A 15.1
(-3)
A 		546.7
(2.5)
P 		597.9
(3)
P 		23.7
(-2.9)
P 		583
B 4.7
(-3)
A 		561.2
(3)
P 		509.5
(2.4)
P 		27.1
(-2.8)
P 		557
C 19.6
(-2.9)
A 		686.7
(2.3)
P 		776.8
(3)
P 		13.1
(-3)
P 		764
avr 13.1
(-3) 		598.2
(2.7) 		628.1
(3) 		21.3
(-2.9) 		615

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 545
1 2 3 4 5 6 range
A 40.2
(-3)
P 		584.9
(3)
P 		212.5
(-1.1)
P 		345.6
(0.4)
P 		272.8
(-0.4)
P 		52.1
(-2.9)
P 		545
B 76.2
(-3)
P 		455.6
(2.9)
P 		278.7
(0.1)
P 		250.5
(-0.3)
P 		463.6
(3)
P 		108.4
(-2.5)
P 		387
C 91.7
(-3)
P 		445.1
(3)
P 		278.7
(0.2)
P 		219.7
(-0.8)
P 		325.2
(1)
P 		112.5
(-2.6)
P 		353
avr 69.4
(-3) 		495.2
(3) 		256.6
(-0.4) 		271.9
(-0.1) 		353.9
(1) 		91
(-2.7) 		426
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16223
Sequence Type Exemplar sequence
Representative Public ID F09F9.2 NCBI
Target Description F09F9.2 /REP_DB=WormBase Gene ID /WP=CE04347 /TR=Q19281 /GB=AAA81761.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076297 NCBI Caenorhabditis elegans F09F9.2 (F09F9.2) mRNA, complete cds. 11/11 None
SNAP00000015415 ENSEMBL cdna:SNAP chromosome:CEL140:X:4110541:4111384:-1 11/11 None
GENEFINDER00000015423 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4110541:4111384:-1 11/11 None
F09F9.2 ENSEMBL cdna:known chromosome:CEL140:X:4110541:4111384:-1 gene:F09F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4110541-4111385(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09F9.2
Entrez Gene 184263 Entrez gene
SwissProt Q19281 EMBL-EBI
WormBase CE04347 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81761 Hypothetical protein F09F9.2 [Caenorhabditis elegans] ref|NP_508698.1| F09F9.2 [Caenorhabditis elegans] 6.0E-84
blast CAE68522 Hypothetical protein CBG14344 [Caenorhabditis briggsae] 7.0E-69
Sequence
Target Sequence 
>C. ELEGANS:183159_AT
tgttgttttggcttgtcttgttgtagtagctgaggcttattcaaaatctggaaatccata
caagactaagaagtacaagtgcgtcgaggtttctgatgatgaagaaattagaattgttcc
aaaaaagaagccagtaacttccaagtacccgtggaagacagaggaggagaaaatcaaccg
caaaaatgaggatttccgatccactgaaagcatcgagatgcccatggctaaaaaagtgaa
aacccaaaaaatcagcactaccactccaccaactgtttccgatgtccaacgcgactccaa
aggacgcccattgattcttgatccaaaacactgcaaacaggttgaacactactccaagac
ttacggtgtaaaggatgttcctgcctgggtagcgagcaactgtgcatttgccaaaatgta
ccttccagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGTTTTGGCTTGTCTTGTTGTA 578 563 24 Antisense
AAGTGCGTCGAGGTTTCTGATGATG 87 159 100 Antisense
GCCAGTAACTTCCAAGTACCCGTGG 549 275 153 Antisense
GAGGATTTCCGATCCACTGAAAGCA 505 403 211 Antisense
CCAAAAAATCAGCACTACCACTCCA 213 275 267 Antisense
GTCCAACGCGACTCCAAAGGACGCC 658 475 307 Antisense
GGACGCCCATTGATTCTTGATCCAA 226 523 325 Antisense
TGAACACTACTCCAAGACTTACGGT 235 571 366 Antisense
TAAAGGATGTTCCTGCCTGGGTAGC 607 639 392 Antisense
GCCTGGGTAGCGAGCAACTGTGCAT 613 281 406 Antisense
ATTTGCCAAAATGTACCTTCCAGGA 567 9 429 Antisense
Sequence Source Affymetrix Proprietary Database