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[183158_at]

Description ZK121.2 /REP_DB=WormBase Gene ID /WP=CE23454 /TR=Q9N4P3 /GB=AAF39995.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 79.8
(3)
A 		49.8
(-0.1)
A 		21.8
(-3)
A 		78.6
(2.9)
A 		58
B 13.6
(-1)
A 		5.2
(-3)
A 		31
(3)
A 		26.3
(1.9)
A 		26
C 23.3
(3)
A 		5.6
(-2.7)
A 		4.8
(-3)
A 		5.7
(-2.7)
A 		19
avr 38.9
(3) 		20.2
(-2.7) 		19.2
(-3) 		36.9
(2.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 84
(3)
A 		10
(-3)
A 		10
(-3)
A 		17.2
(-2.4)
A 		10.4
(-3)
A 		12.3
(-2.8)
A 		74
B 14.7
(-0.2)
A 		11.1
(-1.2)
A 		15.4
(-0)
A 		12
(-1)
A 		4.7
(-3)
A 		26.1
(3)
A 		21
C 28.5
(0.3)
A 		18.5
(-1.1)
A 		10.7
(-2.2)
A 		48.6
(3)
A 		4.5
(-3)
A 		12.3
(-1.9)
A 		44
avr 42.4
(3) 		13.2
(-1.9) 		12
(-2.1) 		25.9
(0.2) 		6.5
(-3) 		16.9
(-1.3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 29.1
(3)
A 		10.8
(-1.7)
A 		5.7
(-3)
A 		11.5
(-1.5)
A 		23
B 4.3
(0.1)
A 		1.3
(-3)
A 		7.2
(3)
A 		5.6
(1.4)
A 		6
C 7.7
(3)
A 		1.6
(-2.5)
A 		1.7
(-2.4)
A 		1
(-3)
A 		7
avr 13.7
(3) 		4.6
(-3) 		4.9
(-2.8) 		6
(-2.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 15.5
(3)
A 		3.5
(-2.4)
A 		2.2
(-3)
A 		4.4
(-2)
A 		3.1
(-2.6)
A 		3
(-2.6)
A 		13
B 5.1
(-0.5)
A 		3.7
(-1.6)
A 		3.7
(-1.6)
A 		3.2
(-2)
A 		1.9
(-3)
A 		9.7
(3)
A 		8
C 10.6
(3)
A 		5.7
(-0.2)
A 		2.7
(-2.2)
A 		9.8
(2.5)
A 		1.4
(-3)
A 		4.1
(-1.2)
A 		9
avr 10.4
(3) 		4.3
(-1.4) 		2.9
(-2.4) 		5.8
(-0.3) 		2.1
(-3) 		5.6
(-0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7144
Sequence Type Exemplar sequence
Representative Public ID ZK121.2 NCBI
Target Description ZK121.2 /REP_DB=WormBase Gene ID /WP=CE23454 /TR=Q9N4P3 /GB=AAF39995.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065741 NCBI Caenorhabditis elegans ZK121.2 (ZK121.2) mRNA, complete cds. 11/11 None
SNAP00000003773 ENSEMBL cdna:SNAP chromosome:CEL140:III:5341646:5344202:1 11/11 None
GENEFINDER00000003776 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5341646:5344202:1 11/11 None
ZK121.2 ENSEMBL cdna:known chromosome:CEL140:III:5341646:5344402:1 gene:ZK121.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5341644-5344201(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK121.2
Entrez Gene 175734 Entrez gene
SwissProt Q9N4P3 EMBL-EBI
WormBase CE23454 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591895_AT similar to R3H domain protein KIAA1002 cfa
CANINE:1587294_AT similar to R3H domain protein KIAA1002 cfa
CANINE_2:CFA.14899.1.S1_AT similar to R3H domain protein KIAA1002 cfa
CANINE_2:CFA.6051.1.A1_AT similar to R3H domain protein KIAA1002 cfa
CANINE_2:CFAAFFX.1293.1.S1_S_AT similar to R3H domain protein KIAA1002 cfa
HG-U133A:203831_AT KIAA1002 protein hs
HG-U133_PLUS_2:203831_AT KIAA1002 protein hs
HG-U133A_2:203831_AT KIAA1002 protein hs
HU35KSUBC:RC_AA035611_AT KIAA1002 protein hs
U133_X3P:G7662441_3P_AT KIAA1002 protein hs
HG-U95AV2:41366_AT KIAA1002 protein hs
U133_X3P:HS2.382352.1.S1_3P_AT KIAA1002 protein hs
HG-U133_PLUS_2:1564937_AT KIAA1002 protein hs
HG-U133_PLUS_2:241491_AT KIAA1002 protein hs
HG-U133B:241491_AT KIAA1002 protein hs
HG-U95C:62785_AT KIAA1002 protein hs
HG-U95E:89403_AT KIAA1002 protein hs
HU35KSUBC:RC_AA481788_AT KIAA1002 protein hs
U133_X3P:HS.190150.0.A1_3P_AT KIAA1002 protein hs
MG-U74BV2:109681_AT RIKEN cDNA 1300003K24 gene mm
MOE430B:1452727_AT RIKEN cDNA 1300003K24 gene mm
MOUSE430_2:1452727_AT RIKEN cDNA 1300003K24 gene mm
MG-U74BV2:108849_AT RIKEN cDNA 1300003K24 gene, mRNA (cDNA clone IMAGE:5372315) mm
MU19KSUBB:TC31171_AT RIKEN cDNA 1300003K24 gene, mRNA (cDNA clone IMAGE:5372315) mm
RG-U34C:RC_AI176739_AT similar to mKIAA1002 protein (predicted) rn
RAE230A:1373814_AT similar to mKIAA1002 protein (predicted) rn
RAT230_2:1373814_AT similar to mKIAA1002 protein (predicted) rn
RAE230B:1382066_AT similar to mKIAA1002 protein (predicted) rn
RAT230_2:1382066_AT similar to mKIAA1002 protein (predicted) rn
RAE230B:1381422_AT Similar to mKIAA1002 protein (predicted) rn
RAT230_2:1381422_AT Similar to mKIAA1002 protein (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39995 Hypothetical protein ZK121.2 [Caenorhabditis elegans] ref|NP_498142.1| ZK121.2 [Caenorhabditis elegans] 0.0
blast CAE56850 Hypothetical protein CBG24677 [Caenorhabditis briggsae] 1.0E-130
blast XP_343222 PREDICTED: similar to mKIAA1002 protein [Rattus norvegicus] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:183158_AT
gccagtagtttgtggaacacctccatcagtgatggttcatcaccaccaccaccacgctca
catccaacaacctccaacctccaactatacaggctatcaggtattcgaagaaatgtcaat
gccatcatcaaactaccaagagcctggaatgtgctccccgggaggaacctactatgagta
tgtacctcaaccagtagttcaaccacaacagtacgctcgtccaattcggtacatgccaca
agattaccgaagacctcaaggagttcagtatatgtatggaccaccaccaccacaacaata
tatgcaataccagccaatggttcatccggaagttgaagttattgtagatccagttcaaac
tcaaccctttccacaagtcagtcactttgtactgcctgatcaacaacagggatactcatc
aagccatcaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGTAGTTTGTGGAACACCTCCA 675 263 1161 Antisense
CTCCAACCTCCAACTATACAGGCTA 238 235 1232 Antisense
GCCATCATCAAACTACCAAGAGCCT 476 279 1281 Antisense
CCAAGAGCCTGGAATGTGCTCCCCG 233 277 1296 Antisense
CTCCCCGGGAGGAACCTACTATGAG 181 229 1314 Antisense
GTATGTACCTCAACCAGTAGTTCAA 52 455 1338 Antisense
CTCGTCCAATTCGGTACATGCCACA 182 233 1376 Antisense
GCCACAAGATTACCGAAGACCTCAA 684 277 1395 Antisense
ACCAGCCAATGGTTCATCCGGAAGT 680 83 1469 Antisense
GTCAGTCACTTTGTACTGCCTGATC 180 467 1537 Antisense
GGGATACTCATCAAGCCATCAAGCA 50 497 1569 Antisense
Sequence Source Affymetrix Proprietary Database