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[183157_s_at]

Description ZK418.4 /REP_DB=WormBase Gene ID /WP=CE25690 /TR=Q23482 /GB=AAA50688.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 89      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 82      6grp_total > 99      4grp_total > 60      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 319.6
(-3)
P 		417.2
(2)
P 		437.3
(3)
P 		341.2
(-1.9)
P 		118
B 407.8
(3)
P 		330.7
(-0.7)
P 		369.1
(1.1)
P 		283.1
(-3)
P 		125
C 397.7
(3)
P 		358.3
(-3)
P 		395.8
(2.7)
P 		384.8
(1)
P 		39
avr 375
(0.6) 		368.7
(0) 		400.7
(3) 		336.4
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 409.8
(1.2)
P 		342
(-0.8)
P 		300.1
(-2)
P 		266.8
(-3)
P 		471.4
(3)
P 		426.4
(1.7)
P 		205
B 329.2
(-2.9)
P 		331.6
(-2.8)
P 		349.1
(-2.2)
P 		325.3
(-3)
P 		497.8
(3)
P 		460.4
(1.7)
P 		173
C 343.5
(-0.8)
P 		282.5
(-3)
P 		318.7
(-1.7)
P 		311.1
(-2)
P 		447.9
(3)
P 		435.6
(2.6)
P 		165
avr 360.8
(-0.9) 		318.7
(-2.4) 		322.6
(-2.2) 		301.1
(-3) 		472.4
(3) 		440.8
(1.9) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 116.4
(3)
P 		90.6
(0.7)
P 		114.3
(2.8)
P 		49.9
(-3)
P 		67
B 130
(3)
P 		81.7
(-1.2)
P 		85.5
(-0.8)
P 		60.3
(-3)
P 		70
C 131.6
(2.5)
P 		103
(0.1)
P 		137.9
(3)
P 		64.9
(-3)
P 		73
avr 126
(3) 		91.8
(-0) 		112.6
(1.8) 		58.4
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 75.5
(-2.2)
P 		121.6
(1.4)
P 		65.4
(-3)
P 		67.7
(-2.8)
P 		142.3
(3)
P 		103.8
(-0)
P 		77
B 114.5
(-1.5)
P 		110.4
(-1.7)
P 		84.8
(-3)
P 		86.2
(-2.9)
P 		202.2
(3)
P 		171.7
(1.4)
P 		117
C 127.3
(1.7)
P 		86.2
(-1.3)
P 		81.1
(-1.7)
P 		62.6
(-3)
P 		144.9
(2.9)
P 		145.8
(3)
P 		83
avr 105.8
(-0.8) 		106.1
(-0.8) 		77.1
(-2.7) 		72.2
(-3) 		163.1
(3) 		140.4
(1.5) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183157_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7642
Sequence Type Exemplar sequence
Representative Public ID ZK418.4 NCBI
Target Description ZK418.4 /REP_DB=WormBase Gene ID /WP=CE25690 /TR=Q23482 /GB=AAA50688.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066142 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-37) (lin-37) mRNA, complete cds. 11/11 A 
SNAP00000003341 ENSEMBL cdna:SNAP chromosome:CEL140:III:7070928:7072478:-1 11/11 None
GENEFINDER00000003353 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7070928:7072478:-1 11/11 None
ZK418.4.1 ENSEMBL cdna:known chromosome:CEL140:III:7070810:7072480:-1 gene:ZK418.4 11/11 None
ZK418.4.2 ENSEMBL cdna:known chromosome:CEL140:III:7070829:7072478:-1 gene:ZK418.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7070925-7072476(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-37
Ensembl ZK418.4
Entrez Gene 175986 Entrez gene
SwissProt Q23482 EMBL-EBI
WormBase CE25690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50688 Abnormal cell lineage protein 37 [Caenorhabditis elegans] ref|NP_498543.1| abnormal cell LINeage family member (lin-37) [Caenorhabditis elegans] 1.0E-147
blast CAE70074 Hypothetical protein CBG16515 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:183157_S_AT
caaccataaaacatcacccatcggaaataattggagtactcccagaagattatactcgtg
ctgatgaagagcccgggcgccaaggacgtccaccaggtcgccctcgtaagatgccgcgtc
acgaatcttcaacttcacttatggaatcaccacgcaagactatgactcgtgattctaaaa
ttatgtttgaattgcgtggaaaaccattcgaaatgatagctggacgttttgaagaagaat
attcacttggtagagcatgggttaaaggacacatgaataatgaatatgaaccaataaaag
ctcaaaggacagactatgcaccgaatctggctgttgattatcttgcatgtcgcgagattc
atcgaatgccacgtccagataaatcaattcctgagctgccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCATAAAACATCACCCATCGGA 180 185 218 Antisense
GTAAGATGCCGCGTCACGAATCTTC 448 457 323 Antisense
GAATCACCACGCAAGACTATGACTC 260 327 361 Antisense
GACTATGACTCGTGATTCTAAAATT 465 371 375 Antisense
GAAATGATAGCTGGACGTTTTGAAG 524 361 427 Antisense
ATATTCACTTGGTAGAGCATGGGTT 285 19 456 Antisense
AAAGCTCAAAGGACAGACTATGCAC 189 125 514 Antisense
CAGACTATGCACCGAATCTGGCTGT 608 203 527 Antisense
GTCGCGAGATTCATCGAATGCCACG 523 475 566 Antisense
GAATGCCACGTCCAGATAAATCAAT 549 329 581 Antisense
TAAATCAATTCCTGAGCTGCCAATT 197 641 597 Antisense
Sequence Source Affymetrix Proprietary Database